Hb_004693_040

Information

Type -
Description -
Location Contig4693: 53703-54161
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004693_040 0.0 - - -
2 Hb_018910_010 0.0320742865 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
3 Hb_002308_040 0.0396342021 - - methyladenine glycosylase family protein [Populus trichocarpa]
4 Hb_002471_310 0.049144702 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
5 Hb_005665_100 0.0524391382 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
6 Hb_024066_020 0.0547614885 - - P66 protein [Hevea brasiliensis]
7 Hb_000049_190 0.0571841406 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_007007_140 0.0595201895 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
9 Hb_001568_040 0.066267624 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010327_040 0.0692739894 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
11 Hb_000802_040 0.0699483219 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
12 Hb_000664_010 0.0717323164 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
13 Hb_004396_020 0.0755386973 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
14 Hb_001496_150 0.0792572866 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
15 Hb_004732_080 0.0805346192 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
16 Hb_153258_030 0.0808072772 - - hypothetical protein RCOM_0853150 [Ricinus communis]
17 Hb_001416_120 0.0810106937 - - caspase, putative [Ricinus communis]
18 Hb_000731_180 0.0819804411 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
19 Hb_011224_030 0.0827088093 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
20 Hb_029584_030 0.0849768774 - - hypothetical protein JCGZ_07310 [Jatropha curcas]

Gene co-expression network

sample Hb_004693_040 Hb_004693_040 Hb_018910_010 Hb_018910_010 Hb_004693_040--Hb_018910_010 Hb_002308_040 Hb_002308_040 Hb_004693_040--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_004693_040--Hb_002471_310 Hb_005665_100 Hb_005665_100 Hb_004693_040--Hb_005665_100 Hb_024066_020 Hb_024066_020 Hb_004693_040--Hb_024066_020 Hb_000049_190 Hb_000049_190 Hb_004693_040--Hb_000049_190 Hb_018910_010--Hb_000049_190 Hb_001568_040 Hb_001568_040 Hb_018910_010--Hb_001568_040 Hb_018910_010--Hb_005665_100 Hb_018910_010--Hb_002308_040 Hb_018910_010--Hb_002471_310 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_002308_040--Hb_000664_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140 Hb_002471_310--Hb_005665_100 Hb_002471_310--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_002471_310--Hb_029584_030 Hb_002471_310--Hb_024066_020 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_000049_190 Hb_005614_060 Hb_005614_060 Hb_005665_100--Hb_005614_060 Hb_024066_020--Hb_007007_140 Hb_004396_020 Hb_004396_020 Hb_024066_020--Hb_004396_020 Hb_004732_080 Hb_004732_080 Hb_024066_020--Hb_004732_080 Hb_024066_020--Hb_002308_040 Hb_000049_190--Hb_001568_040 Hb_000049_190--Hb_005614_060 Hb_000049_190--Hb_002308_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.459678 2.20505 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.223041

CAGE analysis