Hb_000049_190

Information

Type -
Description -
Location Contig49: 148499-151825
Sequence    

Annotation

kegg
ID rcu:RCOM_0541360
description nucleotide binding protein, putative
nr
ID XP_002526531.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID Q0VA16
description WD repeat-containing protein 70 OS=Xenopus tropicalis GN=wdr70 PE=2 SV=1
trembl
ID B9SKL2
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0541360 PE=4 SV=1
Gene Ontology
ID GO:0016740
description wd repeat-containing protein 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_190 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_001568_040 0.0231467366 - - conserved hypothetical protein [Ricinus communis]
3 Hb_018910_010 0.0253525038 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
4 Hb_005665_100 0.0388555586 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
5 Hb_005614_060 0.050561632 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
6 Hb_004693_040 0.0571841406 - - -
7 Hb_002308_040 0.0679402349 - - methyladenine glycosylase family protein [Populus trichocarpa]
8 Hb_002471_310 0.0695342372 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
9 Hb_001496_150 0.0696719353 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
10 Hb_000664_010 0.0727152295 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
11 Hb_004440_030 0.0760800061 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
12 Hb_001357_110 0.0793508333 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_000020_170 0.0816713588 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
14 Hb_000227_290 0.0821753564 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
15 Hb_016734_110 0.084642723 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
16 Hb_029584_030 0.0852280187 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
17 Hb_029883_010 0.0881253772 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_050898_040 0.0918684596 - - -
19 Hb_002263_050 0.101104806 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
20 Hb_153258_030 0.1022555185 - - hypothetical protein RCOM_0853150 [Ricinus communis]

Gene co-expression network

sample Hb_000049_190 Hb_000049_190 Hb_001568_040 Hb_001568_040 Hb_000049_190--Hb_001568_040 Hb_018910_010 Hb_018910_010 Hb_000049_190--Hb_018910_010 Hb_005665_100 Hb_005665_100 Hb_000049_190--Hb_005665_100 Hb_005614_060 Hb_005614_060 Hb_000049_190--Hb_005614_060 Hb_004693_040 Hb_004693_040 Hb_000049_190--Hb_004693_040 Hb_002308_040 Hb_002308_040 Hb_000049_190--Hb_002308_040 Hb_001568_040--Hb_018910_010 Hb_001568_040--Hb_005665_100 Hb_000020_170 Hb_000020_170 Hb_001568_040--Hb_000020_170 Hb_001568_040--Hb_004693_040 Hb_001568_040--Hb_005614_060 Hb_018910_010--Hb_004693_040 Hb_018910_010--Hb_005665_100 Hb_018910_010--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_018910_010--Hb_002471_310 Hb_000664_010 Hb_000664_010 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_005614_060 Hb_005665_100--Hb_002471_310 Hb_005665_100--Hb_002308_040 Hb_004440_030 Hb_004440_030 Hb_005614_060--Hb_004440_030 Hb_005614_060--Hb_000664_010 Hb_000227_290 Hb_000227_290 Hb_005614_060--Hb_000227_290 Hb_029584_030 Hb_029584_030 Hb_005614_060--Hb_029584_030 Hb_004693_040--Hb_002308_040 Hb_004693_040--Hb_002471_310 Hb_004693_040--Hb_005665_100 Hb_024066_020 Hb_024066_020 Hb_004693_040--Hb_024066_020 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_000664_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.231942 0.91036 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.140928

CAGE analysis