Hb_004440_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4440: 31773-32030
Sequence    

Annotation

kegg
ID pop:POPTR_0005s12390g
description hypothetical protein
nr
ID XP_006383186.1
description hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
swissprot
ID Q58FS3
description Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1
trembl
ID B9MXN3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12390g PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_030 0.0 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
2 Hb_005614_060 0.055809554 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
3 Hb_005665_100 0.0716116303 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
4 Hb_000049_190 0.0760800061 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_000664_010 0.0818028445 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
6 Hb_000227_290 0.0844144962 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
7 Hb_029584_030 0.0859399194 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
8 Hb_018910_010 0.0891209031 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
9 Hb_001568_040 0.0897935922 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004225_010 0.0929317139 - - -
11 Hb_001357_110 0.0940733977 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
12 Hb_005653_050 0.098058161 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
13 Hb_002471_310 0.0989085265 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
14 Hb_005295_030 0.0991889313 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
15 Hb_002308_040 0.1018853292 - - methyladenine glycosylase family protein [Populus trichocarpa]
16 Hb_177208_010 0.1035401482 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
17 Hb_050898_040 0.1050445564 - - -
18 Hb_001496_150 0.1051899514 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
19 Hb_004693_040 0.1094011243 - - -
20 Hb_001454_420 0.1115718932 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_004440_030 Hb_004440_030 Hb_005614_060 Hb_005614_060 Hb_004440_030--Hb_005614_060 Hb_005665_100 Hb_005665_100 Hb_004440_030--Hb_005665_100 Hb_000049_190 Hb_000049_190 Hb_004440_030--Hb_000049_190 Hb_000664_010 Hb_000664_010 Hb_004440_030--Hb_000664_010 Hb_000227_290 Hb_000227_290 Hb_004440_030--Hb_000227_290 Hb_029584_030 Hb_029584_030 Hb_004440_030--Hb_029584_030 Hb_005614_060--Hb_005665_100 Hb_005614_060--Hb_000049_190 Hb_005614_060--Hb_000664_010 Hb_005614_060--Hb_000227_290 Hb_005614_060--Hb_029584_030 Hb_005665_100--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_005665_100--Hb_018910_010 Hb_005665_100--Hb_000049_190 Hb_002471_310 Hb_002471_310 Hb_005665_100--Hb_002471_310 Hb_002308_040 Hb_002308_040 Hb_005665_100--Hb_002308_040 Hb_001568_040 Hb_001568_040 Hb_000049_190--Hb_001568_040 Hb_000049_190--Hb_018910_010 Hb_004693_040 Hb_004693_040 Hb_000049_190--Hb_004693_040 Hb_000049_190--Hb_002308_040 Hb_000664_010--Hb_029584_030 Hb_000664_010--Hb_002471_310 Hb_011224_030 Hb_011224_030 Hb_000664_010--Hb_011224_030 Hb_000664_010--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_000664_010--Hb_150179_010 Hb_001357_110 Hb_001357_110 Hb_000227_290--Hb_001357_110 Hb_000227_290--Hb_000664_010 Hb_000227_290--Hb_029584_030 Hb_000227_290--Hb_005665_100 Hb_001496_150 Hb_001496_150 Hb_000227_290--Hb_001496_150 Hb_029584_030--Hb_150179_010 Hb_029584_030--Hb_005665_100 Hb_029584_030--Hb_011224_030 Hb_029584_030--Hb_002471_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 25.0974 114.013 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.567861 0.449778 0 0 23.8594

CAGE analysis