Hb_000020_170

Information

Type -
Description -
Location Contig20: 298878-300137
Sequence    

Annotation

kegg
ID pop:POPTR_2222s00200g
description hypothetical protein
nr
ID XP_012074970.1
description PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
swissprot
ID Q9LZL3
description Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1
trembl
ID A0A067KTR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09098 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase pcs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20163: 298564-298666 , PASA_asmbl_20164: 298728-300412
cDNA
(Sanger)
(ID:Location)		 021_O04.ab1: 298728-299542

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_170 0.0 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
2 Hb_004686_040 0.0438388345 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
3 Hb_000109_200 0.0470458882 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
4 Hb_029883_010 0.051229593 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_001568_040 0.0644125142 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000134_190 0.0705957896 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
7 Hb_007317_050 0.077756905 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
8 Hb_000049_190 0.0816713588 - - nucleotide binding protein, putative [Ricinus communis]
9 Hb_050898_040 0.0853991489 - - -
10 Hb_023582_030 0.0911221878 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_016734_110 0.0938452093 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
12 Hb_018910_010 0.0999690705 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
13 Hb_000005_290 0.1025214161 - - Serine carboxypeptidase, putative [Ricinus communis]
14 Hb_000666_040 0.1045406387 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
15 Hb_007477_010 0.1056380407 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
16 Hb_005614_060 0.1060586409 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
17 Hb_031012_030 0.1073896985 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
18 Hb_186458_010 0.1105181963 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
19 Hb_005353_010 0.1122380981 - - Pectinesterase-1 precursor, putative [Ricinus communis]
20 Hb_000742_070 0.1122384746 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]

Gene co-expression network

sample Hb_000020_170 Hb_000020_170 Hb_004686_040 Hb_004686_040 Hb_000020_170--Hb_004686_040 Hb_000109_200 Hb_000109_200 Hb_000020_170--Hb_000109_200 Hb_029883_010 Hb_029883_010 Hb_000020_170--Hb_029883_010 Hb_001568_040 Hb_001568_040 Hb_000020_170--Hb_001568_040 Hb_000134_190 Hb_000134_190 Hb_000020_170--Hb_000134_190 Hb_007317_050 Hb_007317_050 Hb_000020_170--Hb_007317_050 Hb_004686_040--Hb_000134_190 Hb_004686_040--Hb_029883_010 Hb_023582_030 Hb_023582_030 Hb_004686_040--Hb_023582_030 Hb_004686_040--Hb_000109_200 Hb_000742_070 Hb_000742_070 Hb_004686_040--Hb_000742_070 Hb_000109_200--Hb_007317_050 Hb_031012_030 Hb_031012_030 Hb_000109_200--Hb_031012_030 Hb_005353_010 Hb_005353_010 Hb_000109_200--Hb_005353_010 Hb_000109_200--Hb_000134_190 Hb_050898_040 Hb_050898_040 Hb_029883_010--Hb_050898_040 Hb_000005_290 Hb_000005_290 Hb_029883_010--Hb_000005_290 Hb_029883_010--Hb_000134_190 Hb_029883_010--Hb_000109_200 Hb_000049_190 Hb_000049_190 Hb_001568_040--Hb_000049_190 Hb_018910_010 Hb_018910_010 Hb_001568_040--Hb_018910_010 Hb_005665_100 Hb_005665_100 Hb_001568_040--Hb_005665_100 Hb_004693_040 Hb_004693_040 Hb_001568_040--Hb_004693_040 Hb_005614_060 Hb_005614_060 Hb_001568_040--Hb_005614_060 Hb_000134_190--Hb_023582_030 Hb_000134_190--Hb_000742_070 Hb_017110_030 Hb_017110_030 Hb_000134_190--Hb_017110_030 Hb_186458_010 Hb_186458_010 Hb_000134_190--Hb_186458_010 Hb_000933_030 Hb_000933_030 Hb_000134_190--Hb_000933_030 Hb_007317_050--Hb_005353_010 Hb_016734_110 Hb_016734_110 Hb_007317_050--Hb_016734_110 Hb_000666_040 Hb_000666_040 Hb_007317_050--Hb_000666_040 Hb_007317_050--Hb_031012_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 8.09829 20.1031 0 0.017393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.93656

CAGE analysis