Hb_000005_290

Information

Type -
Description -
Location Contig5: 334299-336961
Sequence    

Annotation

kegg
ID rcu:RCOM_0473920
description Serine carboxypeptidase, putative (EC:3.4.16.5)
nr
ID XP_002523707.1
description Serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q56WF8
description Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2
trembl
ID B9SCI8
description Serine carboxypeptidase, putative OS=Ricinus communis GN=RCOM_0473920 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45708: 334384-335162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_290 0.0 - - Serine carboxypeptidase, putative [Ricinus communis]
2 Hb_002309_020 0.0492394827 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
3 Hb_001975_110 0.056523343 - - -
4 Hb_029883_010 0.0690715732 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_004899_230 0.0732419005 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
6 Hb_002092_060 0.0732963003 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002783_100 0.0817405409 - - Zeamatin precursor, putative [Ricinus communis]
8 Hb_000317_380 0.0818329372 - - Peroxidase 47 precursor, putative [Ricinus communis]
9 Hb_005295_030 0.0844066738 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
10 Hb_001496_150 0.0892474909 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
11 Hb_001775_140 0.0909513824 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
12 Hb_015175_070 0.0924192624 - - cysteine protease, putative [Ricinus communis]
13 Hb_007122_020 0.0953102464 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_050898_040 0.0955157696 - - -
15 Hb_004162_200 0.1009109262 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
16 Hb_016734_110 0.1024491836 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
17 Hb_000020_170 0.1025214161 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
18 Hb_162472_010 0.1033312115 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002636_120 0.1045700946 - - Protein bem46, putative [Ricinus communis]
20 Hb_051212_020 0.1050266091 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000005_290 Hb_000005_290 Hb_002309_020 Hb_002309_020 Hb_000005_290--Hb_002309_020 Hb_001975_110 Hb_001975_110 Hb_000005_290--Hb_001975_110 Hb_029883_010 Hb_029883_010 Hb_000005_290--Hb_029883_010 Hb_004899_230 Hb_004899_230 Hb_000005_290--Hb_004899_230 Hb_002092_060 Hb_002092_060 Hb_000005_290--Hb_002092_060 Hb_002783_100 Hb_002783_100 Hb_000005_290--Hb_002783_100 Hb_002309_020--Hb_002092_060 Hb_015175_070 Hb_015175_070 Hb_002309_020--Hb_015175_070 Hb_002309_020--Hb_001975_110 Hb_005295_030 Hb_005295_030 Hb_002309_020--Hb_005295_030 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_000317_380 Hb_000317_380 Hb_001975_110--Hb_000317_380 Hb_001975_110--Hb_002783_100 Hb_004686_040 Hb_004686_040 Hb_029883_010--Hb_004686_040 Hb_000020_170 Hb_000020_170 Hb_029883_010--Hb_000020_170 Hb_050898_040 Hb_050898_040 Hb_029883_010--Hb_050898_040 Hb_000134_190 Hb_000134_190 Hb_029883_010--Hb_000134_190 Hb_000109_200 Hb_000109_200 Hb_029883_010--Hb_000109_200 Hb_004899_230--Hb_005295_030 Hb_002276_080 Hb_002276_080 Hb_004899_230--Hb_002276_080 Hb_004899_230--Hb_029883_010 Hb_004899_230--Hb_002092_060 Hb_006977_010 Hb_006977_010 Hb_004899_230--Hb_006977_010 Hb_002092_060--Hb_015175_070 Hb_002092_060--Hb_005295_030 Hb_000310_050 Hb_000310_050 Hb_002092_060--Hb_000310_050 Hb_002092_060--Hb_000317_380 Hb_002783_100--Hb_000317_380 Hb_002783_100--Hb_050898_040 Hb_002783_100--Hb_002309_020 Hb_004162_200 Hb_004162_200 Hb_002783_100--Hb_004162_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0145991 0.468868 6.06024 17.6948 0.0220186 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00838742 3.62977

CAGE analysis