Hb_002276_080

Information

Type -
Description -
Location Contig2276: 97004-99378
Sequence    

Annotation

kegg
ID rcu:RCOM_2153590
description Protein bem46, putative
nr
ID XP_002535116.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q5VST6
description Alpha/beta hydrolase domain-containing protein 17B OS=Homo sapiens GN=ABHD17B PE=2 SV=1
trembl
ID B9TA47
description Protein bem46, putative OS=Ricinus communis GN=RCOM_2153590 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_080 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_004899_230 0.084722431 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
3 Hb_162472_010 0.0913553819 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006483_070 0.1047728196 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_000005_290 0.1071602967 - - Serine carboxypeptidase, putative [Ricinus communis]
6 Hb_033720_030 0.1085861262 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_004162_200 0.1121513954 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
8 Hb_001975_110 0.1136096924 - - -
9 Hb_000140_320 0.1146898232 - - delta-8 sphingolipid desaturase [Vernicia fordii]
10 Hb_029883_010 0.118564824 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_012653_050 0.1206984623 - - hypothetical protein RCOM_0460020 [Ricinus communis]
12 Hb_000317_380 0.1210456815 - - Peroxidase 47 precursor, putative [Ricinus communis]
13 Hb_001025_130 0.1220474778 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
14 Hb_000103_450 0.1231632076 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
15 Hb_007122_020 0.1233585808 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
16 Hb_000816_140 0.1243090488 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
17 Hb_000003_370 0.1246729865 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
18 Hb_002902_060 0.1247788759 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
19 Hb_004223_060 0.1255029148 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
20 Hb_132381_010 0.127695666 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002276_080 Hb_002276_080 Hb_004899_230 Hb_004899_230 Hb_002276_080--Hb_004899_230 Hb_162472_010 Hb_162472_010 Hb_002276_080--Hb_162472_010 Hb_006483_070 Hb_006483_070 Hb_002276_080--Hb_006483_070 Hb_000005_290 Hb_000005_290 Hb_002276_080--Hb_000005_290 Hb_033720_030 Hb_033720_030 Hb_002276_080--Hb_033720_030 Hb_004162_200 Hb_004162_200 Hb_002276_080--Hb_004162_200 Hb_004899_230--Hb_000005_290 Hb_005295_030 Hb_005295_030 Hb_004899_230--Hb_005295_030 Hb_029883_010 Hb_029883_010 Hb_004899_230--Hb_029883_010 Hb_002092_060 Hb_002092_060 Hb_004899_230--Hb_002092_060 Hb_006977_010 Hb_006977_010 Hb_004899_230--Hb_006977_010 Hb_001025_130 Hb_001025_130 Hb_162472_010--Hb_001025_130 Hb_001975_110 Hb_001975_110 Hb_162472_010--Hb_001975_110 Hb_162472_010--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_162472_010--Hb_001709_120 Hb_162472_010--Hb_000005_290 Hb_006483_070--Hb_001025_130 Hb_006483_070--Hb_001709_120 Hb_001136_080 Hb_001136_080 Hb_006483_070--Hb_001136_080 Hb_015292_020 Hb_015292_020 Hb_006483_070--Hb_015292_020 Hb_006483_070--Hb_001975_110 Hb_002309_020 Hb_002309_020 Hb_000005_290--Hb_002309_020 Hb_000005_290--Hb_001975_110 Hb_000005_290--Hb_029883_010 Hb_000005_290--Hb_002092_060 Hb_002783_100 Hb_002783_100 Hb_000005_290--Hb_002783_100 Hb_033720_030--Hb_162472_010 Hb_004195_070 Hb_004195_070 Hb_033720_030--Hb_004195_070 Hb_004223_060 Hb_004223_060 Hb_033720_030--Hb_004223_060 Hb_000922_400 Hb_000922_400 Hb_033720_030--Hb_000922_400 Hb_033720_030--Hb_001025_130 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_002311_030 Hb_002311_030 Hb_004162_200--Hb_002311_030 Hb_007113_060 Hb_007113_060 Hb_004162_200--Hb_007113_060 Hb_004162_200--Hb_005295_030 Hb_009151_010 Hb_009151_010 Hb_004162_200--Hb_009151_010 Hb_050898_040 Hb_050898_040 Hb_004162_200--Hb_050898_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0877764 0.134371 3.06817 7.19733 0.100988 0.0462779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0315363 0 0.0252615 1.95906

CAGE analysis