Hb_004162_200

Information

Type -
Description -
Location Contig4162: 170133-171681
Sequence    

Annotation

kegg
ID rcu:RCOM_0475460
description hypothetical protein
nr
ID XP_012064669.1
description PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
swissprot
ID Q8VZ13
description Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1
trembl
ID A0A067LH80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05417 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_200 0.0 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
2 Hb_002067_070 0.0622881351 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
3 Hb_002311_030 0.0638679485 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007113_060 0.0702891413 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
5 Hb_005295_030 0.0733328372 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
6 Hb_009151_010 0.0739432723 - - Peroxidase 3 [Morus notabilis]
7 Hb_050898_040 0.0769955356 - - -
8 Hb_006977_010 0.079357608 - - unnamed protein product [Vitis vinifera]
9 Hb_000816_140 0.0808665198 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
10 Hb_006922_120 0.0830863228 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
11 Hb_002783_100 0.0878384226 - - Zeamatin precursor, putative [Ricinus communis]
12 Hb_010883_170 0.0910252286 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
13 Hb_031984_020 0.092223876 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004218_270 0.0924095642 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
15 Hb_029883_010 0.0927582764 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
16 Hb_004899_230 0.0940065052 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
17 Hb_002740_140 0.0948107266 - - hypothetical protein L484_022679 [Morus notabilis]
18 Hb_162450_010 0.095386756 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
19 Hb_093084_030 0.0979630517 - - oleosin2 [Plukenetia volubilis]
20 Hb_002471_130 0.0989501832 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_200 Hb_004162_200 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_002311_030 Hb_002311_030 Hb_004162_200--Hb_002311_030 Hb_007113_060 Hb_007113_060 Hb_004162_200--Hb_007113_060 Hb_005295_030 Hb_005295_030 Hb_004162_200--Hb_005295_030 Hb_009151_010 Hb_009151_010 Hb_004162_200--Hb_009151_010 Hb_050898_040 Hb_050898_040 Hb_004162_200--Hb_050898_040 Hb_002067_070--Hb_009151_010 Hb_002067_070--Hb_005295_030 Hb_000680_100 Hb_000680_100 Hb_002067_070--Hb_000680_100 Hb_002067_070--Hb_002311_030 Hb_002067_070--Hb_050898_040 Hb_002311_030--Hb_007113_060 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_002311_030--Hb_009151_010 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_002311_030--Hb_162450_010 Hb_006922_120 Hb_006922_120 Hb_007113_060--Hb_006922_120 Hb_000816_140 Hb_000816_140 Hb_007113_060--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_007113_060--Hb_005440_040 Hb_007113_060--Hb_162450_010 Hb_002092_060 Hb_002092_060 Hb_005295_030--Hb_002092_060 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_015175_070 Hb_015175_070 Hb_005295_030--Hb_015175_070 Hb_002309_020 Hb_002309_020 Hb_005295_030--Hb_002309_020 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_009151_010--Hb_007113_060 Hb_000531_030 Hb_000531_030 Hb_009151_010--Hb_000531_030 Hb_029883_010 Hb_029883_010 Hb_050898_040--Hb_029883_010 Hb_004686_040 Hb_004686_040 Hb_050898_040--Hb_004686_040 Hb_000020_170 Hb_000020_170 Hb_050898_040--Hb_000020_170 Hb_002783_100 Hb_002783_100 Hb_050898_040--Hb_002783_100 Hb_050898_040--Hb_005295_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.287669 7.43808 22.3465 0 0.11406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.149974 7.30028

CAGE analysis