Hb_000680_100

Information

Type -
Description -
Location Contig680: 87600-101261
Sequence    

Annotation

kegg
ID rcu:RCOM_0312320
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002527406.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID O22607
description WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3
trembl
ID B9SN37
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0312320 PE=4 SV=1
Gene Ontology
ID GO:0004402
description wd-40 repeat-containing protein msi4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53750: 92393-94040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_100 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_002067_070 0.0886388683 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
3 Hb_015175_070 0.1096412287 - - cysteine protease, putative [Ricinus communis]
4 Hb_000336_120 0.1143035139 - - PREDICTED: mavicyanin [Populus euphratica]
5 Hb_002092_060 0.1186355193 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005295_030 0.120148861 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
7 Hb_009151_010 0.1214582626 - - Peroxidase 3 [Morus notabilis]
8 Hb_000310_050 0.1222741352 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_004162_200 0.1225838318 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
10 Hb_005440_040 0.1258672868 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
11 Hb_100732_020 0.1263859319 - - hypothetical protein POPTR_0001s15930g [Populus trichocarpa]
12 Hb_001269_180 0.1264669777 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_006977_010 0.1269979393 - - unnamed protein product [Vitis vinifera]
14 Hb_000531_030 0.1277633595 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004020_030 0.1282623921 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
16 Hb_000724_060 0.1306335051 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
17 Hb_012114_090 0.1309295505 - - tubulin beta chain, putative [Ricinus communis]
18 Hb_001369_480 0.1325878437 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
19 Hb_001104_060 0.13359366 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
20 Hb_006153_140 0.1356155258 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000680_100 Hb_000680_100 Hb_002067_070 Hb_002067_070 Hb_000680_100--Hb_002067_070 Hb_015175_070 Hb_015175_070 Hb_000680_100--Hb_015175_070 Hb_000336_120 Hb_000336_120 Hb_000680_100--Hb_000336_120 Hb_002092_060 Hb_002092_060 Hb_000680_100--Hb_002092_060 Hb_005295_030 Hb_005295_030 Hb_000680_100--Hb_005295_030 Hb_009151_010 Hb_009151_010 Hb_000680_100--Hb_009151_010 Hb_004162_200 Hb_004162_200 Hb_002067_070--Hb_004162_200 Hb_002067_070--Hb_009151_010 Hb_002067_070--Hb_005295_030 Hb_002311_030 Hb_002311_030 Hb_002067_070--Hb_002311_030 Hb_050898_040 Hb_050898_040 Hb_002067_070--Hb_050898_040 Hb_015175_070--Hb_002092_060 Hb_015175_070--Hb_000336_120 Hb_000310_050 Hb_000310_050 Hb_015175_070--Hb_000310_050 Hb_002309_020 Hb_002309_020 Hb_015175_070--Hb_002309_020 Hb_015175_070--Hb_005295_030 Hb_001349_040 Hb_001349_040 Hb_015175_070--Hb_001349_040 Hb_012114_090 Hb_012114_090 Hb_000336_120--Hb_012114_090 Hb_000336_120--Hb_000310_050 Hb_000699_220 Hb_000699_220 Hb_000336_120--Hb_000699_220 Hb_001369_480 Hb_001369_480 Hb_000336_120--Hb_001369_480 Hb_006717_060 Hb_006717_060 Hb_000336_120--Hb_006717_060 Hb_002092_060--Hb_002309_020 Hb_002092_060--Hb_005295_030 Hb_000005_290 Hb_000005_290 Hb_002092_060--Hb_000005_290 Hb_002092_060--Hb_000310_050 Hb_000317_380 Hb_000317_380 Hb_002092_060--Hb_000317_380 Hb_006977_010 Hb_006977_010 Hb_005295_030--Hb_006977_010 Hb_005295_030--Hb_004162_200 Hb_005295_030--Hb_002309_020 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230 Hb_009151_010--Hb_002311_030 Hb_009151_010--Hb_004162_200 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_007113_060 Hb_007113_060 Hb_009151_010--Hb_007113_060 Hb_000531_030 Hb_000531_030 Hb_009151_010--Hb_000531_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0110761 0.0707885 0.329896 0 0.011733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.100423

CAGE analysis