Hb_004899_230

Information

Type -
Description -
Location Contig4899: 191485-192085
Sequence    

Annotation

kegg
ID rcu:RCOM_0709300
description Indole-3-acetic acid-induced protein ARG7, putative
nr
ID XP_002516215.1
description Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
swissprot
ID P32295
description Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1
trembl
ID B9RR46
description Indole-3-acetic acid-induced protein ARG7, putative OS=Ricinus communis GN=RCOM_0709300 PE=4 SV=1
Gene Ontology
ID GO:0009733
description auxin-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45204: 191701-192257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_230 0.0 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
2 Hb_000005_290 0.0732419005 - - Serine carboxypeptidase, putative [Ricinus communis]
3 Hb_005295_030 0.0786038063 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
4 Hb_002276_080 0.084722431 - - Protein bem46, putative [Ricinus communis]
5 Hb_029883_010 0.0914671154 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
6 Hb_002092_060 0.0930452977 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006977_010 0.0930719433 - - unnamed protein product [Vitis vinifera]
8 Hb_004162_200 0.0940065052 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
9 Hb_002309_020 0.0957768313 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
10 Hb_015175_070 0.0991778456 - - cysteine protease, putative [Ricinus communis]
11 Hb_132381_010 0.0994802351 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_000317_380 0.1007846303 - - Peroxidase 47 precursor, putative [Ricinus communis]
13 Hb_007113_060 0.1024736919 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
14 Hb_006922_120 0.1029649951 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
15 Hb_002783_100 0.1045011793 - - Zeamatin precursor, putative [Ricinus communis]
16 Hb_001975_110 0.1050195724 - - -
17 Hb_050898_040 0.1082521858 - - -
18 Hb_000816_140 0.1123556422 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
19 Hb_004686_040 0.1128327806 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
20 Hb_000140_320 0.1146540998 - - delta-8 sphingolipid desaturase [Vernicia fordii]

Gene co-expression network

sample Hb_004899_230 Hb_004899_230 Hb_000005_290 Hb_000005_290 Hb_004899_230--Hb_000005_290 Hb_005295_030 Hb_005295_030 Hb_004899_230--Hb_005295_030 Hb_002276_080 Hb_002276_080 Hb_004899_230--Hb_002276_080 Hb_029883_010 Hb_029883_010 Hb_004899_230--Hb_029883_010 Hb_002092_060 Hb_002092_060 Hb_004899_230--Hb_002092_060 Hb_006977_010 Hb_006977_010 Hb_004899_230--Hb_006977_010 Hb_002309_020 Hb_002309_020 Hb_000005_290--Hb_002309_020 Hb_001975_110 Hb_001975_110 Hb_000005_290--Hb_001975_110 Hb_000005_290--Hb_029883_010 Hb_000005_290--Hb_002092_060 Hb_002783_100 Hb_002783_100 Hb_000005_290--Hb_002783_100 Hb_005295_030--Hb_002092_060 Hb_005295_030--Hb_006977_010 Hb_004162_200 Hb_004162_200 Hb_005295_030--Hb_004162_200 Hb_015175_070 Hb_015175_070 Hb_005295_030--Hb_015175_070 Hb_005295_030--Hb_002309_020 Hb_162472_010 Hb_162472_010 Hb_002276_080--Hb_162472_010 Hb_006483_070 Hb_006483_070 Hb_002276_080--Hb_006483_070 Hb_002276_080--Hb_000005_290 Hb_033720_030 Hb_033720_030 Hb_002276_080--Hb_033720_030 Hb_002276_080--Hb_004162_200 Hb_004686_040 Hb_004686_040 Hb_029883_010--Hb_004686_040 Hb_000020_170 Hb_000020_170 Hb_029883_010--Hb_000020_170 Hb_050898_040 Hb_050898_040 Hb_029883_010--Hb_050898_040 Hb_000134_190 Hb_000134_190 Hb_029883_010--Hb_000134_190 Hb_000109_200 Hb_000109_200 Hb_029883_010--Hb_000109_200 Hb_002092_060--Hb_015175_070 Hb_002092_060--Hb_002309_020 Hb_000310_050 Hb_000310_050 Hb_002092_060--Hb_000310_050 Hb_000317_380 Hb_000317_380 Hb_002092_060--Hb_000317_380 Hb_006922_120 Hb_006922_120 Hb_006977_010--Hb_006922_120 Hb_010883_170 Hb_010883_170 Hb_006977_010--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_006977_010--Hb_007113_060 Hb_006977_010--Hb_004162_200 Hb_005440_040 Hb_005440_040 Hb_006977_010--Hb_005440_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122446 0.243826 4.15567 12.5913 0.0617751 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.55238

CAGE analysis