Hb_006922_120

Information

Type -
Description -
Location Contig6922: 174251-178122
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02330g
description POPTRDRAFT_823214; calmodulin-binding family protein
nr
ID KDP23109.1
description hypothetical protein JCGZ_01146 [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067JUA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01146 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54488: 174268-178126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_120 0.0 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
2 Hb_006977_010 0.0557017988 - - unnamed protein product [Vitis vinifera]
3 Hb_007113_060 0.058372223 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
4 Hb_013749_040 0.0606646606 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
5 Hb_000816_140 0.0677505018 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
6 Hb_005440_040 0.0689403196 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
7 Hb_010883_170 0.0761051923 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
8 Hb_004162_200 0.0830863228 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
9 Hb_002311_030 0.0845859749 - - conserved hypothetical protein [Ricinus communis]
10 Hb_031984_020 0.0891538558 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002471_130 0.0907896372 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
12 Hb_000140_320 0.0911944105 - - delta-8 sphingolipid desaturase [Vernicia fordii]
13 Hb_000531_030 0.0922540038 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005295_030 0.097504233 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
15 Hb_009151_010 0.0980700097 - - Peroxidase 3 [Morus notabilis]
16 Hb_162450_010 0.0981764832 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
17 Hb_000009_280 0.1003166045 - - Calmodulin, putative [Ricinus communis]
18 Hb_166360_010 0.1020085541 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
19 Hb_132381_010 0.1025564108 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_004218_270 0.1027783549 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_006922_120 Hb_006922_120 Hb_006977_010 Hb_006977_010 Hb_006922_120--Hb_006977_010 Hb_007113_060 Hb_007113_060 Hb_006922_120--Hb_007113_060 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_000816_140 Hb_000816_140 Hb_006922_120--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_006922_120--Hb_005440_040 Hb_010883_170 Hb_010883_170 Hb_006922_120--Hb_010883_170 Hb_005295_030 Hb_005295_030 Hb_006977_010--Hb_005295_030 Hb_006977_010--Hb_010883_170 Hb_006977_010--Hb_007113_060 Hb_004162_200 Hb_004162_200 Hb_006977_010--Hb_004162_200 Hb_006977_010--Hb_005440_040 Hb_007113_060--Hb_000816_140 Hb_007113_060--Hb_005440_040 Hb_002311_030 Hb_002311_030 Hb_007113_060--Hb_002311_030 Hb_007113_060--Hb_004162_200 Hb_162450_010 Hb_162450_010 Hb_007113_060--Hb_162450_010 Hb_013749_040--Hb_007113_060 Hb_013749_040--Hb_006977_010 Hb_000140_320 Hb_000140_320 Hb_013749_040--Hb_000140_320 Hb_013749_040--Hb_005440_040 Hb_013749_040--Hb_002311_030 Hb_000816_140--Hb_010883_170 Hb_012653_050 Hb_012653_050 Hb_000816_140--Hb_012653_050 Hb_000815_050 Hb_000815_050 Hb_000816_140--Hb_000815_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090 Hb_000227_360 Hb_000227_360 Hb_005440_040--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_005440_040--Hb_003858_010 Hb_000531_030 Hb_000531_030 Hb_005440_040--Hb_000531_030 Hb_108090_010 Hb_108090_010 Hb_005440_040--Hb_108090_010 Hb_010883_170--Hb_012653_050 Hb_004202_020 Hb_004202_020 Hb_010883_170--Hb_004202_020 Hb_002221_060 Hb_002221_060 Hb_010883_170--Hb_002221_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108755 2.72174 34.1597 106.252 0.199706 0.145687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.129921 0.246101 0.206833 47.522

CAGE analysis