Hb_000057_090

Information

Type -
Description -
Location Contig57: 174213-174833
Sequence    

Annotation

kegg
ID rcu:RCOM_1494490
description hypothetical protein
nr
ID XP_002516055.1
description hypothetical protein RCOM_1494490 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494490 PE=4 SV=1
Gene Ontology
ID GO:0000166
description hypothetical protein RCOM_1494490

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_090 0.0 - - hypothetical protein RCOM_1494490 [Ricinus communis]
2 Hb_000816_140 0.0756217143 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
3 Hb_068804_190 0.0805321635 - - kinase, putative [Ricinus communis]
4 Hb_011549_040 0.0839680418 - - -
5 Hb_049955_010 0.0842673049 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
6 Hb_056506_040 0.085601261 - - -
7 Hb_010883_170 0.0857165495 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
8 Hb_005532_080 0.0868184911 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
9 Hb_007113_060 0.0874549469 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
10 Hb_166360_010 0.0890839502 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
11 Hb_004943_020 0.0900193409 - - cationic amino acid transporter, putative [Ricinus communis]
12 Hb_012653_050 0.0910936783 - - hypothetical protein RCOM_0460020 [Ricinus communis]
13 Hb_162450_010 0.0912142836 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
14 Hb_004079_070 0.0917256657 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
15 Hb_010577_020 0.0927195273 - - -
16 Hb_001278_120 0.0938610196 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
17 Hb_005269_060 0.0950781419 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
18 Hb_143629_170 0.096491636 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
19 Hb_007904_150 0.0979445468 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
20 Hb_000111_490 0.0989187942 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000057_090 Hb_000057_090 Hb_000816_140 Hb_000816_140 Hb_000057_090--Hb_000816_140 Hb_068804_190 Hb_068804_190 Hb_000057_090--Hb_068804_190 Hb_011549_040 Hb_011549_040 Hb_000057_090--Hb_011549_040 Hb_049955_010 Hb_049955_010 Hb_000057_090--Hb_049955_010 Hb_056506_040 Hb_056506_040 Hb_000057_090--Hb_056506_040 Hb_010883_170 Hb_010883_170 Hb_000057_090--Hb_010883_170 Hb_000816_140--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_000816_140--Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_000816_140--Hb_006922_120 Hb_012653_050 Hb_012653_050 Hb_000816_140--Hb_012653_050 Hb_000815_050 Hb_000815_050 Hb_000816_140--Hb_000815_050 Hb_005532_080 Hb_005532_080 Hb_068804_190--Hb_005532_080 Hb_166360_010 Hb_166360_010 Hb_068804_190--Hb_166360_010 Hb_068804_190--Hb_011549_040 Hb_068804_190--Hb_056506_040 Hb_000111_490 Hb_000111_490 Hb_068804_190--Hb_000111_490 Hb_010577_020 Hb_010577_020 Hb_068804_190--Hb_010577_020 Hb_011549_040--Hb_166360_010 Hb_000933_030 Hb_000933_030 Hb_011549_040--Hb_000933_030 Hb_011549_040--Hb_005532_080 Hb_011549_040--Hb_056506_040 Hb_011549_040--Hb_010577_020 Hb_185608_010 Hb_185608_010 Hb_049955_010--Hb_185608_010 Hb_162450_010 Hb_162450_010 Hb_049955_010--Hb_162450_010 Hb_005269_060 Hb_005269_060 Hb_049955_010--Hb_005269_060 Hb_057862_010 Hb_057862_010 Hb_049955_010--Hb_057862_010 Hb_000343_070 Hb_000343_070 Hb_049955_010--Hb_000343_070 Hb_049955_010--Hb_005532_080 Hb_056506_040--Hb_000111_490 Hb_056506_040--Hb_010577_020 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_056506_040--Hb_005532_080 Hb_010883_170--Hb_012653_050 Hb_004202_020 Hb_004202_020 Hb_010883_170--Hb_004202_020 Hb_002221_060 Hb_002221_060 Hb_010883_170--Hb_002221_060 Hb_010883_170--Hb_006922_120 Hb_006977_010 Hb_006977_010 Hb_010883_170--Hb_006977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0350443 3.4874 7.88073 0.0388736 0.0368416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0926231 4.6966

CAGE analysis