Hb_162450_010

Information

Type -
Description -
Location Contig162450: 1-873
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06050g
description POPTRDRAFT_411355; hypothetical protein
nr
ID XP_012089850.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
swissprot
ID Q9M2K6
description PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana GN=PDCB5 PE=1 SV=2
trembl
ID B9GT34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06050g PE=4 SV=2
Gene Ontology
ID GO:0016740
description glucan endo- -beta-glucosidase 12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162450_010 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
2 Hb_166360_010 0.0458609939 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
3 Hb_004218_270 0.0464943183 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
4 Hb_093084_030 0.048347618 - - oleosin2 [Plukenetia volubilis]
5 Hb_057862_010 0.0515972673 - - protein binding protein, putative [Ricinus communis]
6 Hb_185608_010 0.0518165103 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
7 Hb_005532_080 0.056990776 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
8 Hb_049955_010 0.0608235445 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
9 Hb_011549_040 0.0674119511 - - -
10 Hb_068804_190 0.0682949368 - - kinase, putative [Ricinus communis]
11 Hb_007113_060 0.0732803114 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
12 Hb_000933_030 0.074606058 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
13 Hb_002740_140 0.0746604684 - - hypothetical protein L484_022679 [Morus notabilis]
14 Hb_007382_110 0.0767299968 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
15 Hb_002311_030 0.082324265 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000816_140 0.0887313481 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
17 Hb_011689_010 0.0905639352 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
18 Hb_000057_090 0.0912142836 - - hypothetical protein RCOM_1494490 [Ricinus communis]
19 Hb_004079_070 0.0931294615 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
20 Hb_003858_010 0.0946767238 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]

Gene co-expression network

sample Hb_162450_010 Hb_162450_010 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_093084_030 Hb_093084_030 Hb_162450_010--Hb_093084_030 Hb_057862_010 Hb_057862_010 Hb_162450_010--Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_162450_010--Hb_185608_010 Hb_005532_080 Hb_005532_080 Hb_162450_010--Hb_005532_080 Hb_166360_010--Hb_005532_080 Hb_068804_190 Hb_068804_190 Hb_166360_010--Hb_068804_190 Hb_011549_040 Hb_011549_040 Hb_166360_010--Hb_011549_040 Hb_166360_010--Hb_004218_270 Hb_000933_030 Hb_000933_030 Hb_166360_010--Hb_000933_030 Hb_004218_270--Hb_093084_030 Hb_004218_270--Hb_000933_030 Hb_004218_270--Hb_011549_040 Hb_004218_270--Hb_005532_080 Hb_093084_030--Hb_166360_010 Hb_181908_010 Hb_181908_010 Hb_093084_030--Hb_181908_010 Hb_093084_030--Hb_185608_010 Hb_093084_030--Hb_005532_080 Hb_057862_010--Hb_185608_010 Hb_049955_010 Hb_049955_010 Hb_057862_010--Hb_049955_010 Hb_002740_140 Hb_002740_140 Hb_057862_010--Hb_002740_140 Hb_011344_040 Hb_011344_040 Hb_057862_010--Hb_011344_040 Hb_057862_010--Hb_093084_030 Hb_185608_010--Hb_049955_010 Hb_185608_010--Hb_011344_040 Hb_007382_110 Hb_007382_110 Hb_185608_010--Hb_007382_110 Hb_003858_010 Hb_003858_010 Hb_185608_010--Hb_003858_010 Hb_005532_080--Hb_068804_190 Hb_005532_080--Hb_011549_040 Hb_005532_080--Hb_007382_110 Hb_056506_040 Hb_056506_040 Hb_005532_080--Hb_056506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.69287 5.48087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0267551 2.46129

CAGE analysis