Hb_166360_010

Information

Type -
Description -
Location Contig166360: 4765-6716
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12130g
description POPTRDRAFT_769521; hypothetical protein
nr
ID XP_002315878.1
description hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
swissprot
ID Q8S8M2
description CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana GN=CLE16 PE=2 SV=1
trembl
ID B9HW54
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12130g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15366: 6049-6291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166360_010 0.0 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
2 Hb_005532_080 0.0244276717 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
3 Hb_068804_190 0.0316682542 - - kinase, putative [Ricinus communis]
4 Hb_011549_040 0.0326122568 - - -
5 Hb_162450_010 0.0458609939 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
6 Hb_004218_270 0.0477148745 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
7 Hb_000933_030 0.0534339571 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
8 Hb_093084_030 0.0566052774 - - oleosin2 [Plukenetia volubilis]
9 Hb_007382_110 0.0679801506 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
10 Hb_056506_040 0.0706358126 - - -
11 Hb_049955_010 0.0800808773 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
12 Hb_011689_010 0.0828876448 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
13 Hb_185608_010 0.0831914413 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
14 Hb_000816_140 0.0850876037 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
15 Hb_010577_020 0.0874739217 - - -
16 Hb_000111_490 0.0879850892 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000057_090 0.0890839502 - - hypothetical protein RCOM_1494490 [Ricinus communis]
18 Hb_007113_060 0.0897525622 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
19 Hb_004079_070 0.0906463296 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
20 Hb_057862_010 0.0918255118 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_166360_010 Hb_166360_010 Hb_005532_080 Hb_005532_080 Hb_166360_010--Hb_005532_080 Hb_068804_190 Hb_068804_190 Hb_166360_010--Hb_068804_190 Hb_011549_040 Hb_011549_040 Hb_166360_010--Hb_011549_040 Hb_162450_010 Hb_162450_010 Hb_166360_010--Hb_162450_010 Hb_004218_270 Hb_004218_270 Hb_166360_010--Hb_004218_270 Hb_000933_030 Hb_000933_030 Hb_166360_010--Hb_000933_030 Hb_005532_080--Hb_068804_190 Hb_005532_080--Hb_011549_040 Hb_007382_110 Hb_007382_110 Hb_005532_080--Hb_007382_110 Hb_056506_040 Hb_056506_040 Hb_005532_080--Hb_056506_040 Hb_005532_080--Hb_162450_010 Hb_068804_190--Hb_011549_040 Hb_068804_190--Hb_056506_040 Hb_000111_490 Hb_000111_490 Hb_068804_190--Hb_000111_490 Hb_010577_020 Hb_010577_020 Hb_068804_190--Hb_010577_020 Hb_011549_040--Hb_000933_030 Hb_011549_040--Hb_056506_040 Hb_011549_040--Hb_010577_020 Hb_162450_010--Hb_004218_270 Hb_093084_030 Hb_093084_030 Hb_162450_010--Hb_093084_030 Hb_057862_010 Hb_057862_010 Hb_162450_010--Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_162450_010--Hb_185608_010 Hb_004218_270--Hb_093084_030 Hb_004218_270--Hb_000933_030 Hb_004218_270--Hb_011549_040 Hb_004218_270--Hb_005532_080 Hb_000742_070 Hb_000742_070 Hb_000933_030--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000933_030--Hb_023582_030 Hb_000134_190 Hb_000134_190 Hb_000933_030--Hb_000134_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.87579 2.44399 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.22095

CAGE analysis