Hb_000140_320

Information

Type -
Description -
Location Contig140: 295001-296344
Sequence    

Annotation

kegg
ID tcc:TCM_005234
description Fatty acid/sphingolipid desaturase
nr
ID ADC80921.1
description delta-8 sphingolipid desaturase [Vernicia fordii]
swissprot
ID Q3EBF7
description Delta(8)-fatty-acid desaturase 2 OS=Arabidopsis thaliana GN=SLD2 PE=1 SV=1
trembl
ID D3YLK3
description Delta-8 sphingolipid desaturase OS=Vernicia fordii PE=2 SV=1
Gene Ontology
ID GO:0016021
description delta -fatty-acid desaturase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10851: 295865-296112 , PASA_asmbl_10852: 296205-296566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_320 0.0 - - delta-8 sphingolipid desaturase [Vernicia fordii]
2 Hb_000103_450 0.0808471607 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
3 Hb_010883_170 0.0850321093 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
4 Hb_001047_090 0.0852833888 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
5 Hb_002311_030 0.0901186058 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006922_120 0.0911944105 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_053264_010 0.0930838953 - - beta glucosidase [Hevea brasiliensis]
8 Hb_013749_040 0.0934608214 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
9 Hb_004202_020 0.0934866068 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000816_140 0.0935471826 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
11 Hb_012653_050 0.0943106169 - - hypothetical protein RCOM_0460020 [Ricinus communis]
12 Hb_006846_040 0.0946219271 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
13 Hb_010962_020 0.1003277411 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
14 Hb_004162_200 0.1003362973 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
15 Hb_002471_130 0.103968533 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
16 Hb_000003_370 0.1059806065 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
17 Hb_010407_130 0.1060700123 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
18 Hb_031984_020 0.107381766 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007113_060 0.1082755282 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
20 Hb_000317_380 0.1083090958 - - Peroxidase 47 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_320 Hb_000140_320 Hb_000103_450 Hb_000103_450 Hb_000140_320--Hb_000103_450 Hb_010883_170 Hb_010883_170 Hb_000140_320--Hb_010883_170 Hb_001047_090 Hb_001047_090 Hb_000140_320--Hb_001047_090 Hb_002311_030 Hb_002311_030 Hb_000140_320--Hb_002311_030 Hb_006922_120 Hb_006922_120 Hb_000140_320--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_000140_320--Hb_053264_010 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_000103_450--Hb_053264_010 Hb_006846_040 Hb_006846_040 Hb_000103_450--Hb_006846_040 Hb_004435_020 Hb_004435_020 Hb_000103_450--Hb_004435_020 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_000816_140 Hb_000816_140 Hb_010883_170--Hb_000816_140 Hb_010883_170--Hb_012653_050 Hb_004202_020 Hb_004202_020 Hb_010883_170--Hb_004202_020 Hb_002221_060 Hb_002221_060 Hb_010883_170--Hb_002221_060 Hb_010883_170--Hb_006922_120 Hb_006977_010 Hb_006977_010 Hb_010883_170--Hb_006977_010 Hb_010962_020 Hb_010962_020 Hb_001047_090--Hb_010962_020 Hb_001047_090--Hb_004202_020 Hb_002902_060 Hb_002902_060 Hb_001047_090--Hb_002902_060 Hb_001047_090--Hb_006846_040 Hb_000392_110 Hb_000392_110 Hb_001047_090--Hb_000392_110 Hb_004162_200 Hb_004162_200 Hb_002311_030--Hb_004162_200 Hb_007113_060 Hb_007113_060 Hb_002311_030--Hb_007113_060 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_009151_010 Hb_009151_010 Hb_002311_030--Hb_009151_010 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_002311_030--Hb_162450_010 Hb_006922_120--Hb_006977_010 Hb_006922_120--Hb_007113_060 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_006922_120--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_006922_120--Hb_005440_040 Hb_000903_040 Hb_000903_040 Hb_053264_010--Hb_000903_040 Hb_053264_010--Hb_006846_040 Hb_053264_010--Hb_010962_020 Hb_000003_280 Hb_000003_280 Hb_053264_010--Hb_000003_280 Hb_053264_010--Hb_001047_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0155546 0.299393 4.2888 10.0218 0.0311786 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0279087 0.104397 0.167372 3.77645

CAGE analysis