Hb_013749_040

Information

Type -
Description -
Location Contig13749: 29424-32568
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03830g
description POPTRDRAFT_573741; clavata1 receptor kinase family protein
nr
ID XP_012089379.1
description PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
swissprot
ID Q9FRS6
description Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1
trembl
ID A0A067JIH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23569 PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like protein kinase pxl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10329: 29378-29749 , PASA_asmbl_10333: 31086-31551 , PASA_asmbl_10334: 31608-32735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013749_040 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
2 Hb_006922_120 0.0606646606 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
3 Hb_007113_060 0.090941297 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
4 Hb_006977_010 0.0912404913 - - unnamed protein product [Vitis vinifera]
5 Hb_000140_320 0.0934608214 - - delta-8 sphingolipid desaturase [Vernicia fordii]
6 Hb_005440_040 0.0989110292 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
7 Hb_002311_030 0.0992106064 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000816_140 0.1018757091 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
9 Hb_010883_170 0.1023122813 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_002471_130 0.1032623102 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
11 Hb_031984_020 0.1060550318 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004162_200 0.1070112562 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
13 Hb_007185_050 0.113300562 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
14 Hb_009151_010 0.1159730654 - - Peroxidase 3 [Morus notabilis]
15 Hb_000009_280 0.1173394309 - - Calmodulin, putative [Ricinus communis]
16 Hb_000531_030 0.1182391948 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000103_450 0.1194513336 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
18 Hb_000057_090 0.1237483731 - - hypothetical protein RCOM_1494490 [Ricinus communis]
19 Hb_004899_230 0.126591655 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
20 Hb_005295_030 0.1268331159 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]

Gene co-expression network

sample Hb_013749_040 Hb_013749_040 Hb_006922_120 Hb_006922_120 Hb_013749_040--Hb_006922_120 Hb_007113_060 Hb_007113_060 Hb_013749_040--Hb_007113_060 Hb_006977_010 Hb_006977_010 Hb_013749_040--Hb_006977_010 Hb_000140_320 Hb_000140_320 Hb_013749_040--Hb_000140_320 Hb_005440_040 Hb_005440_040 Hb_013749_040--Hb_005440_040 Hb_002311_030 Hb_002311_030 Hb_013749_040--Hb_002311_030 Hb_006922_120--Hb_006977_010 Hb_006922_120--Hb_007113_060 Hb_000816_140 Hb_000816_140 Hb_006922_120--Hb_000816_140 Hb_006922_120--Hb_005440_040 Hb_010883_170 Hb_010883_170 Hb_006922_120--Hb_010883_170 Hb_007113_060--Hb_000816_140 Hb_007113_060--Hb_005440_040 Hb_007113_060--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_007113_060--Hb_004162_200 Hb_162450_010 Hb_162450_010 Hb_007113_060--Hb_162450_010 Hb_005295_030 Hb_005295_030 Hb_006977_010--Hb_005295_030 Hb_006977_010--Hb_010883_170 Hb_006977_010--Hb_007113_060 Hb_006977_010--Hb_004162_200 Hb_006977_010--Hb_005440_040 Hb_000103_450 Hb_000103_450 Hb_000140_320--Hb_000103_450 Hb_000140_320--Hb_010883_170 Hb_001047_090 Hb_001047_090 Hb_000140_320--Hb_001047_090 Hb_000140_320--Hb_002311_030 Hb_000140_320--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_000140_320--Hb_053264_010 Hb_000227_360 Hb_000227_360 Hb_005440_040--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_005440_040--Hb_003858_010 Hb_000531_030 Hb_000531_030 Hb_005440_040--Hb_000531_030 Hb_108090_010 Hb_108090_010 Hb_005440_040--Hb_108090_010 Hb_002311_030--Hb_004162_200 Hb_002740_140 Hb_002740_140 Hb_002311_030--Hb_002740_140 Hb_009151_010 Hb_009151_010 Hb_002311_030--Hb_009151_010 Hb_057862_010 Hb_057862_010 Hb_002311_030--Hb_057862_010 Hb_002311_030--Hb_162450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00628115 0.120001 1.17935 3.55964 0.00587801 0.0171178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0643363 0.00888958 1.62656

CAGE analysis