Hb_000003_280

Information

Type -
Description -
Location Contig3: 167846-170446
Sequence    

Annotation

kegg
ID rcu:RCOM_1453980
description hypothetical protein
nr
ID XP_002513117.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID B9RGG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1453980 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein iq-domain 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31396: 167727-170603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000878_050 0.0750490799 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
3 Hb_010962_020 0.0792823858 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
4 Hb_053264_010 0.0808971442 - - beta glucosidase [Hevea brasiliensis]
5 Hb_000103_450 0.0824673733 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
6 Hb_001898_040 0.0828903542 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_006846_040 0.085123657 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
8 Hb_005542_120 0.085882984 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
9 Hb_010407_130 0.08689523 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
10 Hb_000392_110 0.0879945975 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
11 Hb_001136_160 0.0926507441 - - catalytic, putative [Ricinus communis]
12 Hb_004435_020 0.094874276 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
13 Hb_009783_010 0.0948841847 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
14 Hb_006002_050 0.0958201569 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
15 Hb_007904_280 0.0963869494 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
16 Hb_000417_210 0.0974440147 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000903_040 0.0980281453 - - PREDICTED: pirin-like protein [Jatropha curcas]
18 Hb_001047_090 0.0994067205 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
19 Hb_007811_020 0.0998825168 - - PREDICTED: expansin-A6 [Jatropha curcas]
20 Hb_002471_130 0.1009736693 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_280 Hb_000003_280 Hb_000878_050 Hb_000878_050 Hb_000003_280--Hb_000878_050 Hb_010962_020 Hb_010962_020 Hb_000003_280--Hb_010962_020 Hb_053264_010 Hb_053264_010 Hb_000003_280--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_006846_040 Hb_006846_040 Hb_000003_280--Hb_006846_040 Hb_004435_020 Hb_004435_020 Hb_000878_050--Hb_004435_020 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000392_110 Hb_000392_110 Hb_000878_050--Hb_000392_110 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_001047_090 Hb_001047_090 Hb_010962_020--Hb_001047_090 Hb_002902_060 Hb_002902_060 Hb_010962_020--Hb_002902_060 Hb_010962_020--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_010962_020--Hb_001136_160 Hb_010962_020--Hb_006846_040 Hb_000903_040 Hb_000903_040 Hb_053264_010--Hb_000903_040 Hb_053264_010--Hb_006846_040 Hb_053264_010--Hb_000103_450 Hb_053264_010--Hb_010962_020 Hb_053264_010--Hb_001047_090 Hb_010407_130 Hb_010407_130 Hb_000103_450--Hb_010407_130 Hb_000103_450--Hb_006846_040 Hb_000103_450--Hb_004435_020 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_001898_040--Hb_001136_160 Hb_009783_010 Hb_009783_010 Hb_001898_040--Hb_009783_010 Hb_001136_040 Hb_001136_040 Hb_001898_040--Hb_001136_040 Hb_012132_050 Hb_012132_050 Hb_001898_040--Hb_012132_050 Hb_007185_050 Hb_007185_050 Hb_001898_040--Hb_007185_050 Hb_006846_040--Hb_001047_090 Hb_138585_010 Hb_138585_010 Hb_006846_040--Hb_138585_010 Hb_006846_040--Hb_000903_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0761643 1.56383 9.42986 22.2802 0.011887 0.083688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1445 0.0682116 0 1.1788 9.49167

CAGE analysis