Hb_001975_110

Information

Type -
Description -
Location Contig1975: 85819-86028
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID J3MWQ0
description Uncharacterized protein OS=Oryza brachyantha GN=OB09G14290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_110 0.0 - - -
2 Hb_000005_290 0.056523343 - - Serine carboxypeptidase, putative [Ricinus communis]
3 Hb_007122_020 0.0696597303 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_002309_020 0.0740348168 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
5 Hb_002636_120 0.0756065744 - - Protein bem46, putative [Ricinus communis]
6 Hb_000317_380 0.078537205 - - Peroxidase 47 precursor, putative [Ricinus communis]
7 Hb_002783_100 0.0818022576 - - Zeamatin precursor, putative [Ricinus communis]
8 Hb_002902_060 0.082007072 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
9 Hb_001709_120 0.0853415545 - - hypothetical protein RCOM_1313640 [Ricinus communis]
10 Hb_002092_060 0.0853421667 - - conserved hypothetical protein [Ricinus communis]
11 Hb_162472_010 0.0878930015 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011618_110 0.0892466509 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
13 Hb_001775_140 0.0903606895 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
14 Hb_001025_130 0.0906096392 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
15 Hb_015292_020 0.094136894 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_029883_010 0.0955045439 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_001136_160 0.095730333 - - catalytic, putative [Ricinus communis]
18 Hb_026218_010 0.097387695 - - conserved hypothetical protein [Ricinus communis]
19 Hb_051212_020 0.1005889362 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
20 Hb_004162_200 0.1019992682 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_110 Hb_001975_110 Hb_000005_290 Hb_000005_290 Hb_001975_110--Hb_000005_290 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_002309_020 Hb_002309_020 Hb_001975_110--Hb_002309_020 Hb_002636_120 Hb_002636_120 Hb_001975_110--Hb_002636_120 Hb_000317_380 Hb_000317_380 Hb_001975_110--Hb_000317_380 Hb_002783_100 Hb_002783_100 Hb_001975_110--Hb_002783_100 Hb_000005_290--Hb_002309_020 Hb_029883_010 Hb_029883_010 Hb_000005_290--Hb_029883_010 Hb_004899_230 Hb_004899_230 Hb_000005_290--Hb_004899_230 Hb_002092_060 Hb_002092_060 Hb_000005_290--Hb_002092_060 Hb_000005_290--Hb_002783_100 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_000964_040 Hb_000964_040 Hb_007122_020--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_007122_020--Hb_150299_010 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040 Hb_002309_020--Hb_002092_060 Hb_015175_070 Hb_015175_070 Hb_002309_020--Hb_015175_070 Hb_005295_030 Hb_005295_030 Hb_002309_020--Hb_005295_030 Hb_001496_150 Hb_001496_150 Hb_002309_020--Hb_001496_150 Hb_011618_110 Hb_011618_110 Hb_002636_120--Hb_011618_110 Hb_011853_020 Hb_011853_020 Hb_002636_120--Hb_011853_020 Hb_000003_370 Hb_000003_370 Hb_002636_120--Hb_000003_370 Hb_026218_010 Hb_026218_010 Hb_002636_120--Hb_026218_010 Hb_096027_010 Hb_096027_010 Hb_002636_120--Hb_096027_010 Hb_000317_380--Hb_002783_100 Hb_000317_380--Hb_002092_060 Hb_000317_380--Hb_002309_020 Hb_000317_380--Hb_015175_070 Hb_000317_380--Hb_000005_290 Hb_050898_040 Hb_050898_040 Hb_002783_100--Hb_050898_040 Hb_002783_100--Hb_002309_020 Hb_004162_200 Hb_004162_200 Hb_002783_100--Hb_004162_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 430.801 3864.88 9736.57 0 7.66887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18151 1.90267 0 40.4494 2163.76

CAGE analysis