Hb_150299_010

Information

Type -
Description -
Location Contig150299: 4728-9989
Sequence    

Annotation

kegg
ID eus:EUTSA_v10009313mg
description hypothetical protein
nr
ID XP_010542768.1
description PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
swissprot
ID D9UBI3
description Inactive protein RESTRICTED TEV MOVEMENT 1 OS=Arabidopsis thaliana GN=RTM1 PE=3 SV=1
trembl
ID V4KYA8
description Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10009313mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12609: 4567-5675 , PASA_asmbl_12610: 4498-5537
cDNA
(Sanger)
(ID:Location)		 016_L08.ab1: 4498-5537

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150299_010 0.0 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
2 Hb_005127_050 0.0592193363 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
3 Hb_000964_040 0.0729379299 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
4 Hb_007122_020 0.0801299277 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_000261_070 0.0957040775 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
6 Hb_004607_060 0.0976389137 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
7 Hb_001789_230 0.1042301002 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000724_060 0.1092272527 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
9 Hb_003175_120 0.1101307137 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
10 Hb_009079_020 0.1104441275 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
11 Hb_002918_270 0.1162798436 - - PREDICTED: protein E6-like [Populus euphratica]
12 Hb_000003_370 0.1169632465 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
13 Hb_009783_010 0.1177919097 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
14 Hb_002260_140 0.117899727 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001136_040 0.1198274766 - - amino acid transporter, putative [Ricinus communis]
16 Hb_012132_050 0.1224747694 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
17 Hb_007904_280 0.1238207865 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
18 Hb_001818_010 0.1238849788 - - Disease resistance response protein, putative [Ricinus communis]
19 Hb_006088_020 0.1241140286 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_009062_020 0.1247354399 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]

Gene co-expression network

sample Hb_150299_010 Hb_150299_010 Hb_005127_050 Hb_005127_050 Hb_150299_010--Hb_005127_050 Hb_000964_040 Hb_000964_040 Hb_150299_010--Hb_000964_040 Hb_007122_020 Hb_007122_020 Hb_150299_010--Hb_007122_020 Hb_000261_070 Hb_000261_070 Hb_150299_010--Hb_000261_070 Hb_004607_060 Hb_004607_060 Hb_150299_010--Hb_004607_060 Hb_001789_230 Hb_001789_230 Hb_150299_010--Hb_001789_230 Hb_000724_060 Hb_000724_060 Hb_005127_050--Hb_000724_060 Hb_005127_050--Hb_004607_060 Hb_009079_020 Hb_009079_020 Hb_005127_050--Hb_009079_020 Hb_005127_050--Hb_007122_020 Hb_003175_120 Hb_003175_120 Hb_005127_050--Hb_003175_120 Hb_000964_040--Hb_007122_020 Hb_009783_010 Hb_009783_010 Hb_000964_040--Hb_009783_010 Hb_000964_040--Hb_001789_230 Hb_012132_050 Hb_012132_050 Hb_000964_040--Hb_012132_050 Hb_000964_040--Hb_004607_060 Hb_001975_110 Hb_001975_110 Hb_007122_020--Hb_001975_110 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040 Hb_000003_370 Hb_000003_370 Hb_000261_070--Hb_000003_370 Hb_007904_280 Hb_007904_280 Hb_000261_070--Hb_007904_280 Hb_000261_070--Hb_000964_040 Hb_009785_030 Hb_009785_030 Hb_000261_070--Hb_009785_030 Hb_004223_060 Hb_004223_060 Hb_000261_070--Hb_004223_060 Hb_004607_060--Hb_000724_060 Hb_001408_080 Hb_001408_080 Hb_004607_060--Hb_001408_080 Hb_004607_060--Hb_012132_050 Hb_003090_220 Hb_003090_220 Hb_001789_230--Hb_003090_220 Hb_002918_270 Hb_002918_270 Hb_001789_230--Hb_002918_270 Hb_002260_140 Hb_002260_140 Hb_001789_230--Hb_002260_140 Hb_001818_010 Hb_001818_010 Hb_001789_230--Hb_001818_010 Hb_003466_010 Hb_003466_010 Hb_001789_230--Hb_003466_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0527369 0.437466 1.62329 4.79646 0.127117 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0384465 1.15604

CAGE analysis