Hb_003090_220

Information

Type -
Description -
Location Contig3090: 220497-220931
Sequence    

Annotation

kegg
ID rcu:RCOM_0303300
description copper transporter, putative
nr
ID XP_012087970.1
description PREDICTED: copper transporter 4 [Jatropha curcas]
swissprot
ID Q8SAA5
description Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2
trembl
ID A0A067JKV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25091 PE=4 SV=1
Gene Ontology
ID GO:0016021
description copper transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_220 0.0 - - PREDICTED: copper transporter 4 [Jatropha curcas]
2 Hb_000207_060 0.0485959953 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
3 Hb_001789_230 0.0649910263 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001818_010 0.0767330642 - - Disease resistance response protein, putative [Ricinus communis]
5 Hb_000408_060 0.0775647989 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
6 Hb_005648_020 0.0915796046 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
7 Hb_170077_020 0.0960772497 - - PREDICTED: probable serine incorporator [Jatropha curcas]
8 Hb_004705_060 0.0979428744 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
9 Hb_002260_140 0.0991267957 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003849_170 0.1026504121 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
11 Hb_051212_020 0.1054690474 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
12 Hb_000866_130 0.10656012 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
13 Hb_000813_020 0.1103564271 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
14 Hb_002918_270 0.1107949487 - - PREDICTED: protein E6-like [Populus euphratica]
15 Hb_135757_030 0.1108689626 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
16 Hb_000093_010 0.1126833565 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
17 Hb_003466_010 0.1134071394 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
18 Hb_002902_060 0.1135020841 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
19 Hb_140627_040 0.1149464368 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
20 Hb_007122_020 0.1152088339 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_003090_220 Hb_003090_220 Hb_000207_060 Hb_000207_060 Hb_003090_220--Hb_000207_060 Hb_001789_230 Hb_001789_230 Hb_003090_220--Hb_001789_230 Hb_001818_010 Hb_001818_010 Hb_003090_220--Hb_001818_010 Hb_000408_060 Hb_000408_060 Hb_003090_220--Hb_000408_060 Hb_005648_020 Hb_005648_020 Hb_003090_220--Hb_005648_020 Hb_170077_020 Hb_170077_020 Hb_003090_220--Hb_170077_020 Hb_000207_060--Hb_001818_010 Hb_004705_060 Hb_004705_060 Hb_000207_060--Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_000207_060--Hb_009367_070 Hb_000331_630 Hb_000331_630 Hb_000207_060--Hb_000331_630 Hb_000207_060--Hb_000408_060 Hb_002918_270 Hb_002918_270 Hb_001789_230--Hb_002918_270 Hb_002260_140 Hb_002260_140 Hb_001789_230--Hb_002260_140 Hb_000964_040 Hb_000964_040 Hb_001789_230--Hb_000964_040 Hb_001789_230--Hb_001818_010 Hb_003466_010 Hb_003466_010 Hb_001789_230--Hb_003466_010 Hb_001818_010--Hb_002260_140 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_009079_020 Hb_009079_020 Hb_001818_010--Hb_009079_020 Hb_000866_130 Hb_000866_130 Hb_001818_010--Hb_000866_130 Hb_112950_010 Hb_112950_010 Hb_001818_010--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001818_010--Hb_135757_030 Hb_002014_130 Hb_002014_130 Hb_000408_060--Hb_002014_130 Hb_000408_060--Hb_001818_010 Hb_006153_140 Hb_006153_140 Hb_000408_060--Hb_006153_140 Hb_003680_240 Hb_003680_240 Hb_000408_060--Hb_003680_240 Hb_000408_060--Hb_000866_130 Hb_005648_020--Hb_003466_010 Hb_003607_080 Hb_003607_080 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_000093_010 Hb_000093_010 Hb_005648_020--Hb_000093_010 Hb_005648_020--Hb_170077_020 Hb_000813_020 Hb_000813_020 Hb_170077_020--Hb_000813_020 Hb_170077_020--Hb_003849_170 Hb_001257_140 Hb_001257_140 Hb_170077_020--Hb_001257_140 Hb_000352_360 Hb_000352_360 Hb_170077_020--Hb_000352_360 Hb_170077_020--Hb_003607_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.981354 5.23247 19.5706 0.214176 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.07504 3.38302

CAGE analysis