Hb_001789_230

Information

Type -
Description -
Location Contig1789: 214471-218238
Sequence    

Annotation

kegg
ID rcu:RCOM_1583000
description hypothetical protein
nr
ID XP_002513670.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SMU4
description UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2 SV=1
trembl
ID B9RIV1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17237: 215655-215817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003090_220 0.0649910263 - - PREDICTED: copper transporter 4 [Jatropha curcas]
3 Hb_002918_270 0.0798077052 - - PREDICTED: protein E6-like [Populus euphratica]
4 Hb_002260_140 0.0810781168 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000964_040 0.0822298529 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
6 Hb_001818_010 0.084921259 - - Disease resistance response protein, putative [Ricinus communis]
7 Hb_003466_010 0.0856528534 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
8 Hb_005648_020 0.0939866532 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
9 Hb_007122_020 0.0948617468 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_000093_010 0.1010981676 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
11 Hb_000866_130 0.1031250601 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
12 Hb_150299_010 0.1042301002 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
13 Hb_012132_050 0.1045641102 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
14 Hb_000408_060 0.1059297311 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
15 Hb_000207_060 0.10756425 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
16 Hb_003607_080 0.1096775109 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
17 Hb_050898_030 0.1096860088 - - conserved hypothetical protein [Ricinus communis]
18 Hb_170077_020 0.1142657809 - - PREDICTED: probable serine incorporator [Jatropha curcas]
19 Hb_009079_020 0.1143633149 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
20 Hb_000139_520 0.1143996241 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]

Gene co-expression network

sample Hb_001789_230 Hb_001789_230 Hb_003090_220 Hb_003090_220 Hb_001789_230--Hb_003090_220 Hb_002918_270 Hb_002918_270 Hb_001789_230--Hb_002918_270 Hb_002260_140 Hb_002260_140 Hb_001789_230--Hb_002260_140 Hb_000964_040 Hb_000964_040 Hb_001789_230--Hb_000964_040 Hb_001818_010 Hb_001818_010 Hb_001789_230--Hb_001818_010 Hb_003466_010 Hb_003466_010 Hb_001789_230--Hb_003466_010 Hb_000207_060 Hb_000207_060 Hb_003090_220--Hb_000207_060 Hb_003090_220--Hb_001818_010 Hb_000408_060 Hb_000408_060 Hb_003090_220--Hb_000408_060 Hb_005648_020 Hb_005648_020 Hb_003090_220--Hb_005648_020 Hb_170077_020 Hb_170077_020 Hb_003090_220--Hb_170077_020 Hb_050898_030 Hb_050898_030 Hb_002918_270--Hb_050898_030 Hb_002918_270--Hb_005648_020 Hb_015292_020 Hb_015292_020 Hb_002918_270--Hb_015292_020 Hb_002918_270--Hb_003466_010 Hb_012132_050 Hb_012132_050 Hb_002918_270--Hb_012132_050 Hb_002260_140--Hb_001818_010 Hb_009079_020 Hb_009079_020 Hb_002260_140--Hb_009079_020 Hb_135757_030 Hb_135757_030 Hb_002260_140--Hb_135757_030 Hb_001500_020 Hb_001500_020 Hb_002260_140--Hb_001500_020 Hb_000172_450 Hb_000172_450 Hb_002260_140--Hb_000172_450 Hb_112950_010 Hb_112950_010 Hb_002260_140--Hb_112950_010 Hb_150299_010 Hb_150299_010 Hb_000964_040--Hb_150299_010 Hb_007122_020 Hb_007122_020 Hb_000964_040--Hb_007122_020 Hb_009783_010 Hb_009783_010 Hb_000964_040--Hb_009783_010 Hb_000964_040--Hb_012132_050 Hb_004607_060 Hb_004607_060 Hb_000964_040--Hb_004607_060 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_001818_010--Hb_009079_020 Hb_000866_130 Hb_000866_130 Hb_001818_010--Hb_000866_130 Hb_001818_010--Hb_112950_010 Hb_001818_010--Hb_135757_030 Hb_003466_010--Hb_005648_020 Hb_000093_010 Hb_000093_010 Hb_003466_010--Hb_000093_010 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.195642 0.604302 1.99339 0.0340468 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0884153 0.391812

CAGE analysis