Hb_015292_020

Information

Type -
Description -
Location Contig15292: 17737-20602
Sequence    

Annotation

kegg
ID rcu:RCOM_0446840
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_002532890.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q9LFS4
description Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1
trembl
ID B9T3S1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis GN=RCOM_0446840 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nsp-interacting kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13147: 17543-20830
cDNA
(Sanger)
(ID:Location)		 038_P08.ab1: 19500-20794

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015292_020 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_000333_140 0.0690450414 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
3 Hb_001709_120 0.0760361235 - - hypothetical protein RCOM_1313640 [Ricinus communis]
4 Hb_001025_130 0.0761085528 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
5 Hb_002902_060 0.0799118676 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
6 Hb_016911_010 0.0822428949 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
7 Hb_007122_020 0.087004687 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_001136_080 0.0897529401 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
9 Hb_009062_020 0.0900396905 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
10 Hb_050898_030 0.0917736693 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002918_270 0.0927507777 - - PREDICTED: protein E6-like [Populus euphratica]
12 Hb_001975_110 0.094136894 - - -
13 Hb_011628_010 0.0946710985 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_051212_020 0.0950414177 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
15 Hb_006483_070 0.0992922272 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_000413_120 0.1008297741 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
17 Hb_162472_010 0.1067262399 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004933_010 0.1068873442 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
19 Hb_039075_010 0.1090970403 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
20 Hb_004705_060 0.1108911919 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]

Gene co-expression network

sample Hb_015292_020 Hb_015292_020 Hb_000333_140 Hb_000333_140 Hb_015292_020--Hb_000333_140 Hb_001709_120 Hb_001709_120 Hb_015292_020--Hb_001709_120 Hb_001025_130 Hb_001025_130 Hb_015292_020--Hb_001025_130 Hb_002902_060 Hb_002902_060 Hb_015292_020--Hb_002902_060 Hb_016911_010 Hb_016911_010 Hb_015292_020--Hb_016911_010 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020 Hb_011628_010 Hb_011628_010 Hb_000333_140--Hb_011628_010 Hb_005211_170 Hb_005211_170 Hb_000333_140--Hb_005211_170 Hb_001136_080 Hb_001136_080 Hb_000333_140--Hb_001136_080 Hb_002307_150 Hb_002307_150 Hb_000333_140--Hb_002307_150 Hb_000310_040 Hb_000310_040 Hb_000333_140--Hb_000310_040 Hb_001709_120--Hb_001025_130 Hb_001709_120--Hb_002902_060 Hb_174639_010 Hb_174639_010 Hb_001709_120--Hb_174639_010 Hb_001056_040 Hb_001056_040 Hb_001709_120--Hb_001056_040 Hb_006483_070 Hb_006483_070 Hb_001709_120--Hb_006483_070 Hb_001025_130--Hb_006483_070 Hb_000586_110 Hb_000586_110 Hb_001025_130--Hb_000586_110 Hb_001025_130--Hb_002902_060 Hb_162472_010 Hb_162472_010 Hb_001025_130--Hb_162472_010 Hb_010962_020 Hb_010962_020 Hb_002902_060--Hb_010962_020 Hb_001047_090 Hb_001047_090 Hb_002902_060--Hb_001047_090 Hb_002902_060--Hb_007122_020 Hb_001975_110 Hb_001975_110 Hb_002902_060--Hb_001975_110 Hb_009062_020 Hb_009062_020 Hb_016911_010--Hb_009062_020 Hb_016911_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_016911_010--Hb_039075_010 Hb_051212_020 Hb_051212_020 Hb_016911_010--Hb_051212_020 Hb_001775_140 Hb_001775_140 Hb_016911_010--Hb_001775_140 Hb_007122_020--Hb_001975_110 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_000964_040 Hb_000964_040 Hb_007122_020--Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_007122_020--Hb_150299_010 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0565976 1.16385 8.25855 20.1805 0.0310375 0.0902377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0491139 0.0193216 0 0.492339 3.17758

CAGE analysis