Hb_009062_020

Information

Type -
Description -
Location Contig9062: 37189-43791
Sequence    

Annotation

kegg
ID cmo:103483136
description peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic
nr
ID XP_008437821.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
swissprot
ID Q0WRJ7
description Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1
trembl
ID D8T7I5
description Peptidyl-prolyl cis-trans isomerase OS=Selaginella moellendorffii GN=SELMODRAFT_448462 PE=4 SV=1
Gene Ontology
ID GO:0006457
description peptidyl-prolyl cis-trans isomerase fkbp20- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62045: 37204-43065 , PASA_asmbl_62046: 42230-42746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009062_020 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
2 Hb_016911_010 0.037820467 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
3 Hb_001136_080 0.0771489346 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
4 Hb_001775_140 0.0834499319 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
5 Hb_000934_120 0.0857443427 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
6 Hb_015292_020 0.0900396905 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_051212_020 0.09012147 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
8 Hb_039075_010 0.0975238313 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_000333_140 0.1012159656 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_140627_040 0.1028788785 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
11 Hb_007122_020 0.1090506363 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_001975_110 0.1110617406 - - -
13 Hb_009662_040 0.1117556213 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
14 Hb_000005_290 0.1120356063 - - Serine carboxypeptidase, putative [Ricinus communis]
15 Hb_002809_040 0.1129740348 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006483_070 0.1133613909 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_001623_560 0.1154193496 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
18 Hb_089040_010 0.1167500293 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
19 Hb_000413_120 0.1169993925 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
20 Hb_000684_110 0.1171864925 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]

Gene co-expression network

sample Hb_009062_020 Hb_009062_020 Hb_016911_010 Hb_016911_010 Hb_009062_020--Hb_016911_010 Hb_001136_080 Hb_001136_080 Hb_009062_020--Hb_001136_080 Hb_001775_140 Hb_001775_140 Hb_009062_020--Hb_001775_140 Hb_000934_120 Hb_000934_120 Hb_009062_020--Hb_000934_120 Hb_015292_020 Hb_015292_020 Hb_009062_020--Hb_015292_020 Hb_051212_020 Hb_051212_020 Hb_009062_020--Hb_051212_020 Hb_016911_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_016911_010--Hb_039075_010 Hb_016911_010--Hb_051212_020 Hb_016911_010--Hb_001775_140 Hb_016911_010--Hb_015292_020 Hb_000333_140 Hb_000333_140 Hb_001136_080--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_001136_080--Hb_011628_010 Hb_006483_070 Hb_006483_070 Hb_001136_080--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_001136_080--Hb_001709_120 Hb_001775_140--Hb_000934_120 Hb_016734_110 Hb_016734_110 Hb_001775_140--Hb_016734_110 Hb_001775_140--Hb_001136_080 Hb_001623_560 Hb_001623_560 Hb_001775_140--Hb_001623_560 Hb_000796_110 Hb_000796_110 Hb_000934_120--Hb_000796_110 Hb_000934_120--Hb_016911_010 Hb_000934_120--Hb_051212_020 Hb_003197_050 Hb_003197_050 Hb_000934_120--Hb_003197_050 Hb_015292_020--Hb_000333_140 Hb_015292_020--Hb_001709_120 Hb_001025_130 Hb_001025_130 Hb_015292_020--Hb_001025_130 Hb_002902_060 Hb_002902_060 Hb_015292_020--Hb_002902_060 Hb_007122_020 Hb_007122_020 Hb_015292_020--Hb_007122_020 Hb_001818_010 Hb_001818_010 Hb_051212_020--Hb_001818_010 Hb_002686_220 Hb_002686_220 Hb_051212_020--Hb_002686_220 Hb_009079_020 Hb_009079_020 Hb_051212_020--Hb_009079_020 Hb_002260_140 Hb_002260_140 Hb_051212_020--Hb_002260_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.380446 4.29615 25.2269 71.2938 0.383013 0.111258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.236035 7.76101

CAGE analysis