Hb_000934_120

Information

Type -
Description -
Location Contig934: 86622-87104
Sequence    

Annotation

kegg
ID tcc:TCM_035439
description hypothetical protein
nr
ID XP_011027379.1
description PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067L3K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25232 PE=4 SV=1
Gene Ontology
ID GO:0009834
description proline-rich receptor-like protein kinase perk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62929: 82543-85881 , PASA_asmbl_62932: 86747-87058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000934_120 0.0 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
2 Hb_000796_110 0.0736079783 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
3 Hb_001775_140 0.0780250802 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
4 Hb_016911_010 0.0843528415 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
5 Hb_051212_020 0.0854898675 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
6 Hb_009062_020 0.0857443427 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
7 Hb_003197_050 0.0858843217 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
8 Hb_001416_120 0.0981055124 - - caspase, putative [Ricinus communis]
9 Hb_002309_020 0.1011392415 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
10 Hb_116349_080 0.1013281078 - - Nectarin-1 precursor, putative [Ricinus communis]
11 Hb_001623_560 0.102397111 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
12 Hb_153258_030 0.1037688699 - - hypothetical protein RCOM_0853150 [Ricinus communis]
13 Hb_000155_030 0.1038188994 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
14 Hb_016734_110 0.104599703 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
15 Hb_090210_010 0.1075924017 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
16 Hb_001496_150 0.1106040639 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
17 Hb_002999_020 0.11094464 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
18 Hb_000684_110 0.1139118851 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
19 Hb_000742_040 0.1156694222 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
20 Hb_002686_220 0.1157799715 - - PREDICTED: expansin-A15-like [Jatropha curcas]

Gene co-expression network

sample Hb_000934_120 Hb_000934_120 Hb_000796_110 Hb_000796_110 Hb_000934_120--Hb_000796_110 Hb_001775_140 Hb_001775_140 Hb_000934_120--Hb_001775_140 Hb_016911_010 Hb_016911_010 Hb_000934_120--Hb_016911_010 Hb_051212_020 Hb_051212_020 Hb_000934_120--Hb_051212_020 Hb_009062_020 Hb_009062_020 Hb_000934_120--Hb_009062_020 Hb_003197_050 Hb_003197_050 Hb_000934_120--Hb_003197_050 Hb_153258_030 Hb_153258_030 Hb_000796_110--Hb_153258_030 Hb_002999_020 Hb_002999_020 Hb_000796_110--Hb_002999_020 Hb_001416_120 Hb_001416_120 Hb_000796_110--Hb_001416_120 Hb_000742_040 Hb_000742_040 Hb_000796_110--Hb_000742_040 Hb_090210_010 Hb_090210_010 Hb_000796_110--Hb_090210_010 Hb_001775_140--Hb_016911_010 Hb_001775_140--Hb_009062_020 Hb_016734_110 Hb_016734_110 Hb_001775_140--Hb_016734_110 Hb_001136_080 Hb_001136_080 Hb_001775_140--Hb_001136_080 Hb_001623_560 Hb_001623_560 Hb_001775_140--Hb_001623_560 Hb_016911_010--Hb_009062_020 Hb_016911_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_016911_010--Hb_039075_010 Hb_016911_010--Hb_051212_020 Hb_015292_020 Hb_015292_020 Hb_016911_010--Hb_015292_020 Hb_001818_010 Hb_001818_010 Hb_051212_020--Hb_001818_010 Hb_002686_220 Hb_002686_220 Hb_051212_020--Hb_002686_220 Hb_009079_020 Hb_009079_020 Hb_051212_020--Hb_009079_020 Hb_002260_140 Hb_002260_140 Hb_051212_020--Hb_002260_140 Hb_009062_020--Hb_001136_080 Hb_009062_020--Hb_015292_020 Hb_009062_020--Hb_051212_020 Hb_116349_080 Hb_116349_080 Hb_003197_050--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_003197_050--Hb_000155_030 Hb_000230_220 Hb_000230_220 Hb_003197_050--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_003197_050--Hb_000964_120 Hb_000497_080 Hb_000497_080 Hb_003197_050--Hb_000497_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.586715 3.27956 11.9283 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.03548

CAGE analysis