Hb_000155_030

Information

Type -
Description -
Location Contig155: 68618-69795
Sequence    

Annotation

kegg
ID rcu:RCOM_1673190
description hypothetical protein
nr
ID XP_012091673.1
description PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21484 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13423: 68904-69269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_030 0.0 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
2 Hb_003197_050 0.0506783473 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
3 Hb_116349_080 0.0547768672 - - Nectarin-1 precursor, putative [Ricinus communis]
4 Hb_025557_090 0.0704283912 - - hypothetical protein glysoja_034865 [Glycine soja]
5 Hb_009158_010 0.0754711759 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
6 Hb_000964_120 0.0827063102 - - DNA-damage-inducible protein f, putative [Ricinus communis]
7 Hb_000230_220 0.0834929024 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003598_050 0.0916486756 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_112950_010 0.0925917119 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
10 Hb_007292_060 0.0944871121 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
11 Hb_000497_080 0.095584719 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002686_220 0.0997556224 - - PREDICTED: expansin-A15-like [Jatropha curcas]
13 Hb_090210_010 0.1006827435 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
14 Hb_011218_010 0.1011368599 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
15 Hb_136944_010 0.1015340499 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
16 Hb_006573_120 0.1024648066 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
17 Hb_000934_120 0.1038188994 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
18 Hb_006351_050 0.104677155 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
19 Hb_000731_180 0.1062291345 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
20 Hb_004102_180 0.1087571288 - - zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000155_030 Hb_000155_030 Hb_003197_050 Hb_003197_050 Hb_000155_030--Hb_003197_050 Hb_116349_080 Hb_116349_080 Hb_000155_030--Hb_116349_080 Hb_025557_090 Hb_025557_090 Hb_000155_030--Hb_025557_090 Hb_009158_010 Hb_009158_010 Hb_000155_030--Hb_009158_010 Hb_000964_120 Hb_000964_120 Hb_000155_030--Hb_000964_120 Hb_000230_220 Hb_000230_220 Hb_000155_030--Hb_000230_220 Hb_003197_050--Hb_116349_080 Hb_003197_050--Hb_000230_220 Hb_003197_050--Hb_000964_120 Hb_000497_080 Hb_000497_080 Hb_003197_050--Hb_000497_080 Hb_000934_120 Hb_000934_120 Hb_003197_050--Hb_000934_120 Hb_116349_080--Hb_025557_090 Hb_116349_080--Hb_009158_010 Hb_116349_080--Hb_000230_220 Hb_003598_050 Hb_003598_050 Hb_116349_080--Hb_003598_050 Hb_025557_090--Hb_009158_010 Hb_022250_140 Hb_022250_140 Hb_025557_090--Hb_022250_140 Hb_025557_090--Hb_000230_220 Hb_025557_090--Hb_000964_120 Hb_006573_120 Hb_006573_120 Hb_009158_010--Hb_006573_120 Hb_118934_010 Hb_118934_010 Hb_009158_010--Hb_118934_010 Hb_009158_010--Hb_022250_140 Hb_007292_060 Hb_007292_060 Hb_000964_120--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_000964_120--Hb_002326_090 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_011218_010 Hb_011218_010 Hb_000964_120--Hb_011218_010 Hb_090210_010 Hb_090210_010 Hb_000964_120--Hb_090210_010 Hb_000152_630 Hb_000152_630 Hb_000230_220--Hb_000152_630 Hb_000188_140 Hb_000188_140 Hb_000230_220--Hb_000188_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.983795 2.73993 18.6834 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0588139 0 0.0238732 1.52237

CAGE analysis