Hb_001006_300

Information

Type -
Description -
Location Contig1006: 361210-362285
Sequence    

Annotation

kegg
ID rcu:RCOM_0776490
description lipid binding protein, putative
nr
ID XP_002521893.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7C4
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0776490 PE=4 SV=1
Gene Ontology
ID GO:0009506
description non-specific lipid-transfer protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00421: 361182-362282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_300 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_017061_010 0.0471565634 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
3 Hb_003858_070 0.0537970033 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
4 Hb_001898_030 0.0712313979 - - protein kinase-coding resistance protein [Nicotiana repanda]
5 Hb_013399_060 0.0724905163 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
6 Hb_000964_120 0.0775298142 - - DNA-damage-inducible protein f, putative [Ricinus communis]
7 Hb_005144_150 0.0800326802 - - hypothetical protein VITISV_013572 [Vitis vinifera]
8 Hb_007292_060 0.0908275984 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
9 Hb_010863_020 0.0966731632 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
10 Hb_003598_050 0.0994016326 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_002304_110 0.1003448528 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
12 Hb_003680_240 0.100431318 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
13 Hb_000497_080 0.105345233 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011218_010 0.1059308659 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
15 Hb_002326_090 0.1083670565 - - amino acid transporter, putative [Ricinus communis]
16 Hb_001257_140 0.1102367805 - - Gb:AAF02129.1, putative [Theobroma cacao]
17 Hb_001296_010 0.1111724441 - - conserved hypothetical protein [Ricinus communis]
18 Hb_069384_010 0.1114610672 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
19 Hb_136944_010 0.1128134517 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
20 Hb_000175_600 0.1134205729 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_300 Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_001006_300--Hb_017061_010 Hb_003858_070 Hb_003858_070 Hb_001006_300--Hb_003858_070 Hb_001898_030 Hb_001898_030 Hb_001006_300--Hb_001898_030 Hb_013399_060 Hb_013399_060 Hb_001006_300--Hb_013399_060 Hb_000964_120 Hb_000964_120 Hb_001006_300--Hb_000964_120 Hb_005144_150 Hb_005144_150 Hb_001006_300--Hb_005144_150 Hb_017061_010--Hb_003858_070 Hb_017061_010--Hb_001898_030 Hb_017061_010--Hb_000964_120 Hb_017061_010--Hb_005144_150 Hb_000497_080 Hb_000497_080 Hb_017061_010--Hb_000497_080 Hb_003858_070--Hb_005144_150 Hb_003858_070--Hb_013399_060 Hb_180088_010 Hb_180088_010 Hb_003858_070--Hb_180088_010 Hb_010863_020 Hb_010863_020 Hb_003858_070--Hb_010863_020 Hb_002304_110 Hb_002304_110 Hb_001898_030--Hb_002304_110 Hb_090210_010 Hb_090210_010 Hb_001898_030--Hb_090210_010 Hb_002326_090 Hb_002326_090 Hb_001898_030--Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_001898_030--Hb_007292_060 Hb_013399_060--Hb_010863_020 Hb_003598_050 Hb_003598_050 Hb_013399_060--Hb_003598_050 Hb_013399_060--Hb_180088_010 Hb_001296_010 Hb_001296_010 Hb_013399_060--Hb_001296_010 Hb_000964_120--Hb_007292_060 Hb_000964_120--Hb_002326_090 Hb_003197_050 Hb_003197_050 Hb_000964_120--Hb_003197_050 Hb_011218_010 Hb_011218_010 Hb_000964_120--Hb_011218_010 Hb_000964_120--Hb_090210_010 Hb_001257_140 Hb_001257_140 Hb_005144_150--Hb_001257_140 Hb_003849_170 Hb_003849_170 Hb_005144_150--Hb_003849_170 Hb_005144_150--Hb_001898_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0861494 8.21271 24.7944 227.69 0.445065 0.267673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.63437 17.8111

CAGE analysis