Hb_051212_020

Information

Type -
Description -
Location Contig51212: 9838-10926
Sequence    

Annotation

kegg
ID vvi:100254003
description 24-methylenesterol C-methyltransferase 2
nr
ID XP_012077714.1
description PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
swissprot
ID Q39227
description 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2
trembl
ID A0A067KE79
description Methyltransferase OS=Jatropha curcas GN=JCGZ_13070 PE=3 SV=1
Gene Ontology
ID GO:0005783
description 24-methylenesterol c-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46371: 9891-11226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051212_020 0.0 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
2 Hb_001818_010 0.0553073621 - - Disease resistance response protein, putative [Ricinus communis]
3 Hb_016911_010 0.076452346 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
4 Hb_002686_220 0.081139594 - - PREDICTED: expansin-A15-like [Jatropha curcas]
5 Hb_009079_020 0.0851933142 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
6 Hb_000934_120 0.0854898675 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
7 Hb_002260_140 0.0872844272 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009062_020 0.09012147 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
9 Hb_002309_020 0.0907783486 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
10 Hb_112950_010 0.0919208021 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
11 Hb_015292_020 0.0950414177 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_140627_040 0.0959375054 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
13 Hb_003680_240 0.0981834955 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
14 Hb_006153_140 0.0987517332 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
15 Hb_007122_020 0.0989591949 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
16 Hb_039075_010 0.0997804541 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_001975_110 0.1005889362 - - -
18 Hb_000207_060 0.1008377228 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
19 Hb_003197_050 0.1008440409 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
20 Hb_135757_030 0.1018322929 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_051212_020 Hb_051212_020 Hb_001818_010 Hb_001818_010 Hb_051212_020--Hb_001818_010 Hb_016911_010 Hb_016911_010 Hb_051212_020--Hb_016911_010 Hb_002686_220 Hb_002686_220 Hb_051212_020--Hb_002686_220 Hb_009079_020 Hb_009079_020 Hb_051212_020--Hb_009079_020 Hb_000934_120 Hb_000934_120 Hb_051212_020--Hb_000934_120 Hb_002260_140 Hb_002260_140 Hb_051212_020--Hb_002260_140 Hb_001818_010--Hb_002260_140 Hb_001818_010--Hb_009079_020 Hb_000866_130 Hb_000866_130 Hb_001818_010--Hb_000866_130 Hb_112950_010 Hb_112950_010 Hb_001818_010--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001818_010--Hb_135757_030 Hb_009062_020 Hb_009062_020 Hb_016911_010--Hb_009062_020 Hb_001136_080 Hb_001136_080 Hb_016911_010--Hb_001136_080 Hb_039075_010 Hb_039075_010 Hb_016911_010--Hb_039075_010 Hb_001775_140 Hb_001775_140 Hb_016911_010--Hb_001775_140 Hb_015292_020 Hb_015292_020 Hb_016911_010--Hb_015292_020 Hb_002686_220--Hb_112950_010 Hb_006153_140 Hb_006153_140 Hb_002686_220--Hb_006153_140 Hb_003598_050 Hb_003598_050 Hb_002686_220--Hb_003598_050 Hb_002686_220--Hb_009079_020 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_015175_070 Hb_015175_070 Hb_002686_220--Hb_015175_070 Hb_009079_020--Hb_006153_140 Hb_009079_020--Hb_002260_140 Hb_000724_060 Hb_000724_060 Hb_009079_020--Hb_000724_060 Hb_009079_020--Hb_112950_010 Hb_000796_110 Hb_000796_110 Hb_000934_120--Hb_000796_110 Hb_000934_120--Hb_001775_140 Hb_000934_120--Hb_016911_010 Hb_000934_120--Hb_009062_020 Hb_003197_050 Hb_003197_050 Hb_000934_120--Hb_003197_050 Hb_002260_140--Hb_135757_030 Hb_001500_020 Hb_001500_020 Hb_002260_140--Hb_001500_020 Hb_000172_450 Hb_000172_450 Hb_002260_140--Hb_000172_450 Hb_002260_140--Hb_112950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0199459 1.29968 6.40098 24.1523 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.316842 3.24857

CAGE analysis