Hb_011628_010

Information

Type -
Description -
Location Contig11628: 4613-5805
Sequence    

Annotation

kegg
ID rcu:RCOM_0788390
description tonoplast intrinsic protein, putative
nr
ID XP_002531118.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID P25818
description Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
trembl
ID B9SYP9
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_0788390 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin tip1-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011628_010 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_000333_140 0.0575375778 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
3 Hb_001136_080 0.0801218598 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
4 Hb_002307_150 0.0860176378 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
5 Hb_005211_170 0.0860539802 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
6 Hb_009367_070 0.089741312 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
7 Hb_039075_010 0.0915277813 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_004112_080 0.0926306673 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
9 Hb_004933_010 0.0937735167 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
10 Hb_015292_020 0.0946710985 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_030360_010 0.0949137127 - - -
12 Hb_001635_140 0.0985904261 - - protein with unknown function [Ricinus communis]
13 Hb_004705_060 0.0997529751 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
14 Hb_001856_210 0.0999373233 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
15 Hb_016911_010 0.100185146 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
16 Hb_001709_120 0.1014720833 - - hypothetical protein RCOM_1313640 [Ricinus communis]
17 Hb_000310_040 0.1029357195 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
18 Hb_001775_140 0.1131224772 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
19 Hb_001709_090 0.1138533942 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
20 Hb_002970_030 0.1162924606 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011628_010 Hb_011628_010 Hb_000333_140 Hb_000333_140 Hb_011628_010--Hb_000333_140 Hb_001136_080 Hb_001136_080 Hb_011628_010--Hb_001136_080 Hb_002307_150 Hb_002307_150 Hb_011628_010--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_011628_010--Hb_005211_170 Hb_009367_070 Hb_009367_070 Hb_011628_010--Hb_009367_070 Hb_039075_010 Hb_039075_010 Hb_011628_010--Hb_039075_010 Hb_000333_140--Hb_005211_170 Hb_000333_140--Hb_001136_080 Hb_015292_020 Hb_015292_020 Hb_000333_140--Hb_015292_020 Hb_000333_140--Hb_002307_150 Hb_000310_040 Hb_000310_040 Hb_000333_140--Hb_000310_040 Hb_016911_010 Hb_016911_010 Hb_001136_080--Hb_016911_010 Hb_009062_020 Hb_009062_020 Hb_001136_080--Hb_009062_020 Hb_006483_070 Hb_006483_070 Hb_001136_080--Hb_006483_070 Hb_001709_120 Hb_001709_120 Hb_001136_080--Hb_001709_120 Hb_002307_150--Hb_005211_170 Hb_010080_050 Hb_010080_050 Hb_002307_150--Hb_010080_050 Hb_001971_040 Hb_001971_040 Hb_002307_150--Hb_001971_040 Hb_002028_270 Hb_002028_270 Hb_002307_150--Hb_002028_270 Hb_005211_170--Hb_010080_050 Hb_000445_260 Hb_000445_260 Hb_005211_170--Hb_000445_260 Hb_005211_170--Hb_000310_040 Hb_034713_010 Hb_034713_010 Hb_009367_070--Hb_034713_010 Hb_004705_060 Hb_004705_060 Hb_009367_070--Hb_004705_060 Hb_004112_080 Hb_004112_080 Hb_009367_070--Hb_004112_080 Hb_140627_040 Hb_140627_040 Hb_009367_070--Hb_140627_040 Hb_000207_060 Hb_000207_060 Hb_009367_070--Hb_000207_060 Hb_030360_010 Hb_030360_010 Hb_039075_010--Hb_030360_010 Hb_039075_010--Hb_000310_040 Hb_039075_010--Hb_016911_010 Hb_039075_010--Hb_004112_080 Hb_039075_010--Hb_000333_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0581919 0.568024 1.25117 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0461757 0.113659

CAGE analysis