Hb_005127_050

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig5127: 66028-68612
Sequence    

Annotation

kegg
ID rcu:RCOM_0801600
description hypothetical protein
nr
ID XP_011010889.1
description PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
swissprot
ID Q8LAL2
description Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2
trembl
ID B9RS11
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0801600 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46383: 66425-66579 , PASA_asmbl_46385: 67731-69092 , PASA_asmbl_46386: 67687-68256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005127_050 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
2 Hb_150299_010 0.0592193363 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
3 Hb_000724_060 0.0836651103 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
4 Hb_004607_060 0.0990764717 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
5 Hb_009079_020 0.1027641682 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
6 Hb_007122_020 0.1031981559 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_003175_120 0.104200972 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
8 Hb_000964_040 0.1061370122 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
9 Hb_000680_060 0.1122665909 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
10 Hb_015175_070 0.1132696377 - - cysteine protease, putative [Ricinus communis]
11 Hb_002092_060 0.1137793378 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001136_040 0.118861013 - - amino acid transporter, putative [Ricinus communis]
13 Hb_003032_110 0.1193654708 - - -
14 Hb_002997_150 0.1196150765 - - hypothetical protein RCOM_1406750 [Ricinus communis]
15 Hb_004899_230 0.1213678272 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
16 Hb_028514_010 0.1230055603 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
17 Hb_006153_140 0.123847062 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
18 Hb_002260_140 0.1242127312 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000261_070 0.1279465735 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
20 Hb_002309_020 0.1282432511 - - hypothetical protein JCGZ_26057 [Jatropha curcas]

Gene co-expression network

sample Hb_005127_050 Hb_005127_050 Hb_150299_010 Hb_150299_010 Hb_005127_050--Hb_150299_010 Hb_000724_060 Hb_000724_060 Hb_005127_050--Hb_000724_060 Hb_004607_060 Hb_004607_060 Hb_005127_050--Hb_004607_060 Hb_009079_020 Hb_009079_020 Hb_005127_050--Hb_009079_020 Hb_007122_020 Hb_007122_020 Hb_005127_050--Hb_007122_020 Hb_003175_120 Hb_003175_120 Hb_005127_050--Hb_003175_120 Hb_000964_040 Hb_000964_040 Hb_150299_010--Hb_000964_040 Hb_150299_010--Hb_007122_020 Hb_000261_070 Hb_000261_070 Hb_150299_010--Hb_000261_070 Hb_150299_010--Hb_004607_060 Hb_001789_230 Hb_001789_230 Hb_150299_010--Hb_001789_230 Hb_000724_060--Hb_009079_020 Hb_015175_070 Hb_015175_070 Hb_000724_060--Hb_015175_070 Hb_000724_060--Hb_004607_060 Hb_002092_060 Hb_002092_060 Hb_000724_060--Hb_002092_060 Hb_000724_060--Hb_007122_020 Hb_001408_080 Hb_001408_080 Hb_004607_060--Hb_001408_080 Hb_012132_050 Hb_012132_050 Hb_004607_060--Hb_012132_050 Hb_004607_060--Hb_000964_040 Hb_006153_140 Hb_006153_140 Hb_009079_020--Hb_006153_140 Hb_002260_140 Hb_002260_140 Hb_009079_020--Hb_002260_140 Hb_001818_010 Hb_001818_010 Hb_009079_020--Hb_001818_010 Hb_112950_010 Hb_112950_010 Hb_009079_020--Hb_112950_010 Hb_002686_220 Hb_002686_220 Hb_009079_020--Hb_002686_220 Hb_001975_110 Hb_001975_110 Hb_007122_020--Hb_001975_110 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_007122_020--Hb_000964_040 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040 Hb_135757_030 Hb_135757_030 Hb_003175_120--Hb_135757_030 Hb_003175_120--Hb_009079_020 Hb_003175_120--Hb_002260_140 Hb_001500_020 Hb_001500_020 Hb_003175_120--Hb_001500_020 Hb_003175_120--Hb_006153_140 Hb_021596_050 Hb_021596_050 Hb_003175_120--Hb_021596_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0248754 0.195819 0.592812 2.06435 0.0373415 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.51627

CAGE analysis