Hb_000922_400

Information

Type -
Description -
Location Contig922: 315323-317404
Sequence    

Annotation

kegg
ID tcc:TCM_012098
description Uncharacterized protein isoform 1
nr
ID XP_012080041.1
description PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FUL7
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_012098 PE=4 SV=1
Gene Ontology
ID GO:0016301
description wall-associated receptor kinase 3 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62519: 316168-316613 , PASA_asmbl_62520: 316662-317422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_400 0.0 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
2 Hb_006002_050 0.1063260597 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
3 Hb_000345_550 0.1138550497 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
4 Hb_033720_030 0.1224805781 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
5 Hb_005784_010 0.1242111314 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
6 Hb_012055_070 0.1293392902 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_002783_280 0.1302603262 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
8 Hb_000820_110 0.1307534471 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
9 Hb_000997_080 0.1323273235 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
10 Hb_019516_070 0.1324218227 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
11 Hb_000069_560 0.1330666529 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
12 Hb_007595_010 0.134674095 - - Photosystem II reaction center protein K [Medicago truncatula]
13 Hb_001159_230 0.1354394468 - - Kinesin heavy chain, putative [Ricinus communis]
14 Hb_000011_280 0.1360096042 - - pectinesterase family protein [Populus trichocarpa]
15 Hb_019516_060 0.1385572853 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
16 Hb_000261_070 0.1397659603 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
17 Hb_003097_160 0.141002197 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
18 Hb_003177_040 0.1423406232 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_001775_080 0.142353161 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
20 Hb_001951_080 0.1426204119 - - O-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000922_400 Hb_000922_400 Hb_006002_050 Hb_006002_050 Hb_000922_400--Hb_006002_050 Hb_000345_550 Hb_000345_550 Hb_000922_400--Hb_000345_550 Hb_033720_030 Hb_033720_030 Hb_000922_400--Hb_033720_030 Hb_005784_010 Hb_005784_010 Hb_000922_400--Hb_005784_010 Hb_012055_070 Hb_012055_070 Hb_000922_400--Hb_012055_070 Hb_002783_280 Hb_002783_280 Hb_000922_400--Hb_002783_280 Hb_000011_280 Hb_000011_280 Hb_006002_050--Hb_000011_280 Hb_000997_080 Hb_000997_080 Hb_006002_050--Hb_000997_080 Hb_001159_230 Hb_001159_230 Hb_006002_050--Hb_001159_230 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_006002_050--Hb_002783_280 Hb_000297_140 Hb_000297_140 Hb_006002_050--Hb_000297_140 Hb_000345_550--Hb_005784_010 Hb_009785_030 Hb_009785_030 Hb_000345_550--Hb_009785_030 Hb_001951_080 Hb_001951_080 Hb_000345_550--Hb_001951_080 Hb_009783_010 Hb_009783_010 Hb_000345_550--Hb_009783_010 Hb_009023_010 Hb_009023_010 Hb_000345_550--Hb_009023_010 Hb_007904_280 Hb_007904_280 Hb_000345_550--Hb_007904_280 Hb_002276_080 Hb_002276_080 Hb_033720_030--Hb_002276_080 Hb_162472_010 Hb_162472_010 Hb_033720_030--Hb_162472_010 Hb_004195_070 Hb_004195_070 Hb_033720_030--Hb_004195_070 Hb_004223_060 Hb_004223_060 Hb_033720_030--Hb_004223_060 Hb_001025_130 Hb_001025_130 Hb_033720_030--Hb_001025_130 Hb_005784_010--Hb_001951_080 Hb_005784_010--Hb_007904_280 Hb_005784_010--Hb_004223_060 Hb_001819_020 Hb_001819_020 Hb_005784_010--Hb_001819_020 Hb_005784_010--Hb_009783_010 Hb_001232_060 Hb_001232_060 Hb_012055_070--Hb_001232_060 Hb_005116_150 Hb_005116_150 Hb_012055_070--Hb_005116_150 Hb_007113_060 Hb_007113_060 Hb_012055_070--Hb_007113_060 Hb_031984_020 Hb_031984_020 Hb_012055_070--Hb_031984_020 Hb_002200_030 Hb_002200_030 Hb_012055_070--Hb_002200_030 Hb_005440_040 Hb_005440_040 Hb_012055_070--Hb_005440_040 Hb_000317_380 Hb_000317_380 Hb_002783_280--Hb_000317_380 Hb_007122_020 Hb_007122_020 Hb_002783_280--Hb_007122_020 Hb_000140_320 Hb_000140_320 Hb_002783_280--Hb_000140_320 Hb_002783_280--Hb_162472_010 Hb_000413_120 Hb_000413_120 Hb_002783_280--Hb_000413_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.362536 0.684779 3.53606 10.0537 0.230535 0.211029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0921689 0.144991 0.134081 0.160063 3.80172

CAGE analysis