Hb_001819_020

Information

Type -
Description -
Location Contig1819: 69248-72138
Sequence    

Annotation

kegg
ID rcu:RCOM_0851700
description hypothetical protein
nr
ID XP_012081932.1
description PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RUB8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0851700 PE=4 SV=1
Gene Ontology
ID GO:0016043
description PREDICTED: uncharacterized protein LOC105641890 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17708: 69263-70609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001819_020 0.0 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
2 Hb_005784_010 0.0923854734 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
3 Hb_001951_080 0.1354306862 - - O-acetyltransferase, putative [Ricinus communis]
4 Hb_000345_550 0.1473517411 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
5 Hb_012484_050 0.1511599696 - - PREDICTED: kinesin KP1 [Jatropha curcas]
6 Hb_004223_060 0.1535985957 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
7 Hb_001032_020 0.1561513092 - - ankyrin repeat protein [Bruguiera gymnorhiza]
8 Hb_006693_040 0.1580666803 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
9 Hb_000608_150 0.1587845853 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
10 Hb_001159_230 0.1592501387 - - Kinesin heavy chain, putative [Ricinus communis]
11 Hb_001584_280 0.1600029521 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
12 Hb_125573_010 0.1603424926 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_001486_280 0.161096616 - - hypothetical protein RCOM_1321910 [Ricinus communis]
14 Hb_007904_280 0.1620573083 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
15 Hb_003097_160 0.16214823 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
16 Hb_012098_160 0.1625975664 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_000083_080 0.1633269676 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
18 Hb_006816_490 0.1646162846 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 21 [Jatropha curcas]
19 Hb_010407_130 0.1665861911 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
20 Hb_010337_040 0.1674754574 - - -

Gene co-expression network

sample Hb_001819_020 Hb_001819_020 Hb_005784_010 Hb_005784_010 Hb_001819_020--Hb_005784_010 Hb_001951_080 Hb_001951_080 Hb_001819_020--Hb_001951_080 Hb_000345_550 Hb_000345_550 Hb_001819_020--Hb_000345_550 Hb_012484_050 Hb_012484_050 Hb_001819_020--Hb_012484_050 Hb_004223_060 Hb_004223_060 Hb_001819_020--Hb_004223_060 Hb_001032_020 Hb_001032_020 Hb_001819_020--Hb_001032_020 Hb_005784_010--Hb_000345_550 Hb_005784_010--Hb_001951_080 Hb_007904_280 Hb_007904_280 Hb_005784_010--Hb_007904_280 Hb_005784_010--Hb_004223_060 Hb_009783_010 Hb_009783_010 Hb_005784_010--Hb_009783_010 Hb_001951_080--Hb_012484_050 Hb_001951_080--Hb_000345_550 Hb_001486_280 Hb_001486_280 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210 Hb_009785_030 Hb_009785_030 Hb_000345_550--Hb_009785_030 Hb_000345_550--Hb_009783_010 Hb_009023_010 Hb_009023_010 Hb_000345_550--Hb_009023_010 Hb_000345_550--Hb_007904_280 Hb_007163_100 Hb_007163_100 Hb_012484_050--Hb_007163_100 Hb_012098_160 Hb_012098_160 Hb_012484_050--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_012484_050--Hb_001512_130 Hb_000012_330 Hb_000012_330 Hb_012484_050--Hb_000012_330 Hb_012484_050--Hb_001486_280 Hb_004223_060--Hb_007904_280 Hb_000878_050 Hb_000878_050 Hb_004223_060--Hb_000878_050 Hb_000077_280 Hb_000077_280 Hb_004223_060--Hb_000077_280 Hb_000003_370 Hb_000003_370 Hb_004223_060--Hb_000003_370 Hb_000103_450 Hb_000103_450 Hb_004223_060--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_004223_060--Hb_000392_110 Hb_001674_010 Hb_001674_010 Hb_001032_020--Hb_001674_010 Hb_008054_030 Hb_008054_030 Hb_001032_020--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_001032_020--Hb_002066_110 Hb_001032_020--Hb_012098_160 Hb_001032_020--Hb_007163_100 Hb_015561_010 Hb_015561_010 Hb_001032_020--Hb_015561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118587 0.464326 2.87203 5.1423 0.0925385 0.678111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0427433 0 0.255525 3.05478

CAGE analysis