Hb_001951_080

Information

Type -
Description -
Location Contig1951: 66440-73690
Sequence    

Annotation

kegg
ID rcu:RCOM_0634180
description O-acetyltransferase, putative
nr
ID XP_002519732.1
description O-acetyltransferase, putative [Ricinus communis]
swissprot
ID P0CM56
description Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CAS1 PE=3 SV=1
trembl
ID B9S163
description O-acetyltransferase, putative OS=Ricinus communis GN=RCOM_0634180 PE=4 SV=1
Gene Ontology
ID GO:0016740
description cas1 domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19478: 66404-66914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_080 0.0 - - O-acetyltransferase, putative [Ricinus communis]
2 Hb_012484_050 0.0795587476 - - PREDICTED: kinesin KP1 [Jatropha curcas]
3 Hb_005784_010 0.080804851 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
4 Hb_000345_550 0.088279482 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
5 Hb_001486_280 0.0935818029 - - hypothetical protein RCOM_1321910 [Ricinus communis]
6 Hb_003097_160 0.1011682359 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
7 Hb_003125_210 0.1057904998 - - Phospholipase C 4 precursor, putative [Ricinus communis]
8 Hb_001159_230 0.1061896718 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_012098_160 0.1068660791 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
10 Hb_000417_210 0.1094031275 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001699_080 0.1124197652 - - unnamed protein product [Coffea canephora]
12 Hb_001512_130 0.1127082859 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
13 Hb_000270_380 0.1127142155 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
14 Hb_002894_080 0.1143575202 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000012_330 0.1150014186 - - pollen specific protein sf21, putative [Ricinus communis]
16 Hb_002485_010 0.1165461978 - - PREDICTED: extensin [Jatropha curcas]
17 Hb_000617_330 0.1179271854 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
18 Hb_009023_010 0.1184549195 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
19 Hb_001032_020 0.1186391785 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_009785_030 0.1190749114 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_080 Hb_001951_080 Hb_012484_050 Hb_012484_050 Hb_001951_080--Hb_012484_050 Hb_005784_010 Hb_005784_010 Hb_001951_080--Hb_005784_010 Hb_000345_550 Hb_000345_550 Hb_001951_080--Hb_000345_550 Hb_001486_280 Hb_001486_280 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210 Hb_007163_100 Hb_007163_100 Hb_012484_050--Hb_007163_100 Hb_012098_160 Hb_012098_160 Hb_012484_050--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_012484_050--Hb_001512_130 Hb_000012_330 Hb_000012_330 Hb_012484_050--Hb_000012_330 Hb_012484_050--Hb_001486_280 Hb_005784_010--Hb_000345_550 Hb_007904_280 Hb_007904_280 Hb_005784_010--Hb_007904_280 Hb_004223_060 Hb_004223_060 Hb_005784_010--Hb_004223_060 Hb_001819_020 Hb_001819_020 Hb_005784_010--Hb_001819_020 Hb_009783_010 Hb_009783_010 Hb_005784_010--Hb_009783_010 Hb_009785_030 Hb_009785_030 Hb_000345_550--Hb_009785_030 Hb_000345_550--Hb_009783_010 Hb_009023_010 Hb_009023_010 Hb_000345_550--Hb_009023_010 Hb_000345_550--Hb_007904_280 Hb_000270_380 Hb_000270_380 Hb_001486_280--Hb_000270_380 Hb_001486_280--Hb_012098_160 Hb_001486_280--Hb_009023_010 Hb_002485_010 Hb_002485_010 Hb_001486_280--Hb_002485_010 Hb_000904_120 Hb_000904_120 Hb_001486_280--Hb_000904_120 Hb_003097_160--Hb_012484_050 Hb_000417_210 Hb_000417_210 Hb_003097_160--Hb_000417_210 Hb_003097_160--Hb_005784_010 Hb_006788_110 Hb_006788_110 Hb_003097_160--Hb_006788_110 Hb_000910_060 Hb_000910_060 Hb_003097_160--Hb_000910_060 Hb_009113_080 Hb_009113_080 Hb_003125_210--Hb_009113_080 Hb_004696_010 Hb_004696_010 Hb_003125_210--Hb_004696_010 Hb_002815_020 Hb_002815_020 Hb_003125_210--Hb_002815_020 Hb_003086_030 Hb_003086_030 Hb_003125_210--Hb_003086_030 Hb_010222_040 Hb_010222_040 Hb_003125_210--Hb_010222_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.621078 4.14082 14.1563 32.4921 1.00704 0.760061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165259 0.11559 0.027524 2.30714 20.9594

CAGE analysis