Hb_000910_060

Information

Type -
Description -
Location Contig910: 109835-110951
Sequence    

Annotation

kegg
ID rcu:RCOM_0864270
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002522909.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID O65399
description Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3
trembl
ID B9SA90
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0864270 PE=4 SV=1
Gene Ontology
ID GO:0016787
description glucan endo- -beta-glucosidase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62117: 110314-110975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000910_060 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_009252_070 0.1006702262 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
3 Hb_001269_660 0.1065500637 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
4 Hb_012395_060 0.1080629249 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
5 Hb_000103_440 0.1112595119 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
6 Hb_136408_040 0.1141223953 - - PREDICTED: protein NDR1 [Jatropha curcas]
7 Hb_005295_020 0.1161737819 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
8 Hb_001688_050 0.1177563478 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
9 Hb_138585_010 0.1181754248 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
10 Hb_121624_010 0.1204768854 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]
11 Hb_007163_110 0.1216450556 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
12 Hb_003097_160 0.1220978136 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
13 Hb_000417_210 0.1225509735 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_061256_020 0.1250509905 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
15 Hb_001512_130 0.126432517 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
16 Hb_011709_010 0.1277238175 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
17 Hb_000368_050 0.1284962274 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_005656_120 0.1312273433 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
19 Hb_004804_010 0.1341796645 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
20 Hb_143629_170 0.1344373107 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000910_060 Hb_000910_060 Hb_009252_070 Hb_009252_070 Hb_000910_060--Hb_009252_070 Hb_001269_660 Hb_001269_660 Hb_000910_060--Hb_001269_660 Hb_012395_060 Hb_012395_060 Hb_000910_060--Hb_012395_060 Hb_000103_440 Hb_000103_440 Hb_000910_060--Hb_000103_440 Hb_136408_040 Hb_136408_040 Hb_000910_060--Hb_136408_040 Hb_005295_020 Hb_005295_020 Hb_000910_060--Hb_005295_020 Hb_047612_010 Hb_047612_010 Hb_009252_070--Hb_047612_010 Hb_000368_050 Hb_000368_050 Hb_009252_070--Hb_000368_050 Hb_005269_060 Hb_005269_060 Hb_009252_070--Hb_005269_060 Hb_138585_010 Hb_138585_010 Hb_009252_070--Hb_138585_010 Hb_004650_110 Hb_004650_110 Hb_009252_070--Hb_004650_110 Hb_009252_070--Hb_000103_440 Hb_149507_010 Hb_149507_010 Hb_001269_660--Hb_149507_010 Hb_001269_660--Hb_012395_060 Hb_010264_010 Hb_010264_010 Hb_001269_660--Hb_010264_010 Hb_121624_010 Hb_121624_010 Hb_001269_660--Hb_121624_010 Hb_001277_010 Hb_001277_010 Hb_001269_660--Hb_001277_010 Hb_002518_230 Hb_002518_230 Hb_001269_660--Hb_002518_230 Hb_169077_030 Hb_169077_030 Hb_012395_060--Hb_169077_030 Hb_004804_010 Hb_004804_010 Hb_012395_060--Hb_004804_010 Hb_001534_140 Hb_001534_140 Hb_012395_060--Hb_001534_140 Hb_012395_060--Hb_138585_010 Hb_000152_570 Hb_000152_570 Hb_012395_060--Hb_000152_570 Hb_003058_240 Hb_003058_240 Hb_000103_440--Hb_003058_240 Hb_001140_290 Hb_001140_290 Hb_000103_440--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_000103_440--Hb_002151_070 Hb_002809_180 Hb_002809_180 Hb_000103_440--Hb_002809_180 Hb_005711_030 Hb_005711_030 Hb_000103_440--Hb_005711_030 Hb_003152_020 Hb_003152_020 Hb_000103_440--Hb_003152_020 Hb_136408_040--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_136408_040--Hb_007163_110 Hb_002062_010 Hb_002062_010 Hb_136408_040--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_136408_040--Hb_001512_130 Hb_000017_180 Hb_000017_180 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_005295_020--Hb_001512_130 Hb_005295_020--Hb_136408_040 Hb_012484_050 Hb_012484_050 Hb_005295_020--Hb_012484_050 Hb_005295_020--Hb_002062_010 Hb_005295_020--Hb_003152_020 Hb_005295_020--Hb_007163_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0616418 0.234484 3.57547 11.9959 0.244615 0.166416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.32867 9.03978

CAGE analysis