Hb_005295_020

Information

Type -
Description -
Location Contig5295: 46444-51476
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05700g
description hypothetical protein
nr
ID XP_011033186.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID U5FSA5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05700g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47274: 46274-47616 , PASA_asmbl_47275: 50859-52004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005295_020 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
2 Hb_001512_130 0.0797793957 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
3 Hb_136408_040 0.082955679 - - PREDICTED: protein NDR1 [Jatropha curcas]
4 Hb_012484_050 0.0985731865 - - PREDICTED: kinesin KP1 [Jatropha curcas]
5 Hb_002062_010 0.1011514139 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
6 Hb_003152_020 0.1020459688 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
7 Hb_007163_110 0.1023625793 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
8 Hb_000031_180 0.1035342358 - - sarcosine oxidase, putative [Ricinus communis]
9 Hb_000270_380 0.1039640175 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
10 Hb_005656_120 0.1055102496 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
11 Hb_000358_090 0.1058159605 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001699_080 0.1060105028 - - unnamed protein product [Coffea canephora]
13 Hb_015561_010 0.1079420845 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000017_180 0.1081308337 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
15 Hb_001541_200 0.1084401297 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
16 Hb_000103_130 0.1093527329 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
17 Hb_000417_210 0.1116192103 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_027472_060 0.1124174164 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
19 Hb_001913_040 0.1124816876 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006242_050 0.1130716923 - - Osmotin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005295_020 Hb_005295_020 Hb_001512_130 Hb_001512_130 Hb_005295_020--Hb_001512_130 Hb_136408_040 Hb_136408_040 Hb_005295_020--Hb_136408_040 Hb_012484_050 Hb_012484_050 Hb_005295_020--Hb_012484_050 Hb_002062_010 Hb_002062_010 Hb_005295_020--Hb_002062_010 Hb_003152_020 Hb_003152_020 Hb_005295_020--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_005295_020--Hb_007163_110 Hb_015561_010 Hb_015561_010 Hb_001512_130--Hb_015561_010 Hb_001512_130--Hb_002062_010 Hb_000017_180 Hb_000017_180 Hb_001512_130--Hb_000017_180 Hb_001512_130--Hb_136408_040 Hb_005656_120 Hb_005656_120 Hb_001512_130--Hb_005656_120 Hb_009023_010 Hb_009023_010 Hb_001512_130--Hb_009023_010 Hb_136408_040--Hb_003152_020 Hb_136408_040--Hb_007163_110 Hb_136408_040--Hb_002062_010 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_001951_080 Hb_001951_080 Hb_012484_050--Hb_001951_080 Hb_007163_100 Hb_007163_100 Hb_012484_050--Hb_007163_100 Hb_012098_160 Hb_012098_160 Hb_012484_050--Hb_012098_160 Hb_012484_050--Hb_001512_130 Hb_000012_330 Hb_000012_330 Hb_012484_050--Hb_000012_330 Hb_001486_280 Hb_001486_280 Hb_012484_050--Hb_001486_280 Hb_128986_010 Hb_128986_010 Hb_002062_010--Hb_128986_010 Hb_002062_010--Hb_015561_010 Hb_002062_010--Hb_000017_180 Hb_002062_010--Hb_005656_120 Hb_003417_050 Hb_003417_050 Hb_002062_010--Hb_003417_050 Hb_002119_100 Hb_002119_100 Hb_002062_010--Hb_002119_100 Hb_001397_020 Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_003152_020--Hb_007163_110 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_005842_010 Hb_005842_010 Hb_007163_110--Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_007163_110--Hb_006242_050 Hb_007163_110--Hb_000017_180 Hb_004650_110 Hb_004650_110 Hb_007163_110--Hb_004650_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.067398 0.172699 1.08785 2.70085 0.0322274 0.0220297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0278317 0.168348 2.54443

CAGE analysis