Hb_002119_100

Information

Type -
Description -
Location Contig2119: 142615-147208
Sequence    

Annotation

kegg
ID rcu:RCOM_1149990
description cytochrome B561, putative
nr
ID XP_002527545.1
description cytochrome B561, putative [Ricinus communis]
swissprot
ID Q67ZF6
description Probable transmembrane ascorbate ferrireductase 3 OS=Arabidopsis thaliana GN=CYB561C PE=2 SV=1
trembl
ID B9SNH6
description Cytochrome B561, putative OS=Ricinus communis GN=RCOM_1149990 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable transmembrane ascorbate ferrireductase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21929: 142660-143353 , PASA_asmbl_21930: 146010-147184
cDNA
(Sanger)
(ID:Location)		 004_I06.ab1: 146079-147184

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_100 0.0 - - cytochrome B561, putative [Ricinus communis]
2 Hb_007483_090 0.0400020145 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_780 0.050520284 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
4 Hb_002062_010 0.0595353143 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
5 Hb_003417_050 0.0596970477 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_002740_050 0.064377443 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
7 Hb_015561_010 0.064416929 - - conserved hypothetical protein [Ricinus communis]
8 Hb_128986_010 0.0674598398 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000031_180 0.0674787435 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_000684_070 0.0749888298 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
11 Hb_003723_050 0.0751694076 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000103_200 0.0757528162 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_000232_040 0.0759995781 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
14 Hb_000599_150 0.0785573034 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
15 Hb_002600_170 0.0813398656 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003855_060 0.0820681136 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
17 Hb_052530_020 0.0824388878 - - cytochrome B5 isoform 1, putative [Ricinus communis]
18 Hb_000904_120 0.0824407413 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000928_030 0.0830716809 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
20 Hb_004459_010 0.0836740323 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_002119_100 Hb_002119_100 Hb_007483_090 Hb_007483_090 Hb_002119_100--Hb_007483_090 Hb_000329_780 Hb_000329_780 Hb_002119_100--Hb_000329_780 Hb_002062_010 Hb_002062_010 Hb_002119_100--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_015561_010 Hb_015561_010 Hb_002119_100--Hb_015561_010 Hb_007483_090--Hb_003417_050 Hb_007483_090--Hb_000329_780 Hb_007483_090--Hb_002062_010 Hb_128986_010 Hb_128986_010 Hb_007483_090--Hb_128986_010 Hb_007483_090--Hb_015561_010 Hb_006831_090 Hb_006831_090 Hb_000329_780--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_000329_780--Hb_002600_170 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_008536_020 Hb_008536_020 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_002062_010--Hb_128986_010 Hb_002062_010--Hb_015561_010 Hb_000017_180 Hb_000017_180 Hb_002062_010--Hb_000017_180 Hb_005656_120 Hb_005656_120 Hb_002062_010--Hb_005656_120 Hb_002062_010--Hb_003417_050 Hb_003417_050--Hb_128986_010 Hb_003417_050--Hb_005656_120 Hb_143629_170 Hb_143629_170 Hb_003417_050--Hb_143629_170 Hb_003855_060 Hb_003855_060 Hb_002740_050--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_002740_050--Hb_007904_150 Hb_002740_050--Hb_143629_170 Hb_149694_010 Hb_149694_010 Hb_002740_050--Hb_149694_010 Hb_002740_050--Hb_000329_780 Hb_001512_130 Hb_001512_130 Hb_015561_010--Hb_001512_130 Hb_009023_010 Hb_009023_010 Hb_015561_010--Hb_009023_010 Hb_015561_010--Hb_003417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.18846 10.8796 18.6555 0.0577018 0.0398498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.238731 18.051

CAGE analysis