Hb_002600_170

Information

Type -
Description -
Location Contig2600: 193756-215271
Sequence    

Annotation

kegg
ID rcu:RCOM_0737410
description hypothetical protein
nr
ID XP_002527560.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID B9SNJ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737410 PE=4 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin carboxyl-terminal hydrolase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27107: 209241-215390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002374_180 0.0438752692 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
3 Hb_006831_090 0.0450118711 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
4 Hb_008536_020 0.0479117656 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
5 Hb_000329_780 0.0491213447 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
6 Hb_004032_280 0.0576083107 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
7 Hb_005532_030 0.0704248648 - - DNA binding protein, putative [Ricinus communis]
8 Hb_003163_010 0.0750797903 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
9 Hb_166718_010 0.0759179408 - - heat-shock protein, putative [Ricinus communis]
10 Hb_027472_060 0.0811985939 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
11 Hb_002119_100 0.0813398656 - - cytochrome B561, putative [Ricinus communis]
12 Hb_172426_070 0.0822813847 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
13 Hb_000803_080 0.0824358286 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_147028_010 0.0828807563 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
15 Hb_000031_180 0.0833579255 - - sarcosine oxidase, putative [Ricinus communis]
16 Hb_002740_050 0.0840445027 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
17 Hb_000520_040 0.0864314144 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
18 Hb_086300_010 0.0876748247 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_005842_010 0.0903398429 - - nitrate transporter, putative [Ricinus communis]
20 Hb_002336_050 0.0909429072 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002600_170 Hb_002600_170 Hb_002374_180 Hb_002374_180 Hb_002600_170--Hb_002374_180 Hb_006831_090 Hb_006831_090 Hb_002600_170--Hb_006831_090 Hb_008536_020 Hb_008536_020 Hb_002600_170--Hb_008536_020 Hb_000329_780 Hb_000329_780 Hb_002600_170--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_002600_170--Hb_004032_280 Hb_005532_030 Hb_005532_030 Hb_002600_170--Hb_005532_030 Hb_002374_180--Hb_006831_090 Hb_002374_180--Hb_000329_780 Hb_006075_030 Hb_006075_030 Hb_002374_180--Hb_006075_030 Hb_002374_180--Hb_005532_030 Hb_002374_180--Hb_008536_020 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_004032_280 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_008536_020--Hb_000329_780 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_008536_020--Hb_004032_280 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_000599_150 Hb_000599_150 Hb_004032_280--Hb_000599_150 Hb_004032_280--Hb_000329_780 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_002336_050 Hb_002336_050 Hb_005532_030--Hb_002336_050 Hb_005532_030--Hb_006831_090 Hb_086300_010 Hb_086300_010 Hb_005532_030--Hb_086300_010 Hb_005532_030--Hb_000329_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.100491 1.38916 1.84758 0.0181914 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0839106 2.47614

CAGE analysis