Hb_006831_090

Information

Type -
Description -
Location Contig6831: 48973-52086
Sequence    

Annotation

kegg
ID rcu:RCOM_0820440
description hypothetical protein
nr
ID XP_012082214.1
description PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16416 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53920: 49098-52367 , PASA_asmbl_53921: 49890-50255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_090 0.0 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
2 Hb_000329_780 0.0437055671 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
3 Hb_002600_170 0.0450118711 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004032_280 0.0462719918 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
5 Hb_002374_180 0.0500522638 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
6 Hb_008536_020 0.0509671672 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
7 Hb_172426_070 0.0685300374 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
8 Hb_003163_010 0.0690172277 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
9 Hb_000031_180 0.0709124313 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_005532_030 0.0712226442 - - DNA binding protein, putative [Ricinus communis]
11 Hb_147028_010 0.0762849276 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
12 Hb_166718_010 0.0771404144 - - heat-shock protein, putative [Ricinus communis]
13 Hb_005337_100 0.0795762395 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
14 Hb_002740_050 0.0799046094 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
15 Hb_027472_060 0.080155053 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
16 Hb_000599_150 0.0832119373 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
17 Hb_000803_080 0.0833703436 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_002119_100 0.0844443398 - - cytochrome B561, putative [Ricinus communis]
19 Hb_002572_040 0.0859697992 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
20 Hb_006075_030 0.0866389405 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006831_090 Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_006831_090--Hb_000329_780 Hb_002600_170 Hb_002600_170 Hb_006831_090--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_006831_090--Hb_004032_280 Hb_002374_180 Hb_002374_180 Hb_006831_090--Hb_002374_180 Hb_008536_020 Hb_008536_020 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_000329_780--Hb_002600_170 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_002374_180 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_002600_170--Hb_002374_180 Hb_002600_170--Hb_008536_020 Hb_002600_170--Hb_004032_280 Hb_005532_030 Hb_005532_030 Hb_002600_170--Hb_005532_030 Hb_000599_150 Hb_000599_150 Hb_004032_280--Hb_000599_150 Hb_004032_280--Hb_000329_780 Hb_004032_280--Hb_008536_020 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_006075_030 Hb_006075_030 Hb_002374_180--Hb_006075_030 Hb_002374_180--Hb_005532_030 Hb_002374_180--Hb_008536_020 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_003163_010 Hb_003163_010 Hb_172426_070--Hb_003163_010 Hb_001491_070 Hb_001491_070 Hb_172426_070--Hb_001491_070 Hb_172426_070--Hb_002600_170 Hb_172426_070--Hb_004032_280 Hb_172426_070--Hb_008536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0312371 0.829307 12.2903 15.2653 0.0403517 0.076722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0236712 0 0 0.741292 20.2447

CAGE analysis