Hb_000076_240

Information

Type -
Description -
Location Contig76: 176082-177504
Sequence    

Annotation

kegg
ID rcu:RCOM_0185000
description Early nodulin 55-2 precursor, putative
nr
ID XP_002522863.1
description Early nodulin 55-2 precursor, putative [Ricinus communis]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9SA44
description Early nodulin 55-2, putative OS=Ricinus communis GN=RCOM_0185000 PE=4 SV=1
Gene Ontology
ID GO:0009055
description early nodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57255: 176367-177045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_240 0.0 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
2 Hb_003549_100 0.0707736963 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
3 Hb_010883_160 0.0722815282 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_132880_010 0.0746177226 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
5 Hb_001397_020 0.0755518733 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_003152_020 0.0813209131 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
7 Hb_136408_040 0.0813471096 - - PREDICTED: protein NDR1 [Jatropha curcas]
8 Hb_002073_130 0.0829900834 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
9 Hb_095744_010 0.0840730351 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
10 Hb_010589_010 0.0865535004 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
11 Hb_001657_020 0.0883814134 - - heat shock family protein [Populus trichocarpa]
12 Hb_007163_110 0.0890361158 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
13 Hb_000654_020 0.0896581613 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
14 Hb_000002_110 0.0913066494 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
15 Hb_001433_090 0.0932657751 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
16 Hb_020956_030 0.0946760442 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
17 Hb_015807_130 0.0951644263 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
18 Hb_144550_010 0.0979125462 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_002809_180 0.0982151964 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
20 Hb_000809_010 0.0983008328 - - hypothetical protein JCGZ_12342 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_240 Hb_000076_240 Hb_003549_100 Hb_003549_100 Hb_000076_240--Hb_003549_100 Hb_010883_160 Hb_010883_160 Hb_000076_240--Hb_010883_160 Hb_132880_010 Hb_132880_010 Hb_000076_240--Hb_132880_010 Hb_001397_020 Hb_001397_020 Hb_000076_240--Hb_001397_020 Hb_003152_020 Hb_003152_020 Hb_000076_240--Hb_003152_020 Hb_136408_040 Hb_136408_040 Hb_000076_240--Hb_136408_040 Hb_003549_100--Hb_001397_020 Hb_003549_100--Hb_132880_010 Hb_029587_010 Hb_029587_010 Hb_003549_100--Hb_029587_010 Hb_010589_010 Hb_010589_010 Hb_003549_100--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003549_100--Hb_002809_180 Hb_095744_010 Hb_095744_010 Hb_003549_100--Hb_095744_010 Hb_000654_020 Hb_000654_020 Hb_010883_160--Hb_000654_020 Hb_010883_160--Hb_001397_020 Hb_000029_210 Hb_000029_210 Hb_010883_160--Hb_000029_210 Hb_010883_160--Hb_003549_100 Hb_000402_060 Hb_000402_060 Hb_010883_160--Hb_000402_060 Hb_002073_130 Hb_002073_130 Hb_132880_010--Hb_002073_130 Hb_132880_010--Hb_095744_010 Hb_144550_010 Hb_144550_010 Hb_132880_010--Hb_144550_010 Hb_002326_010 Hb_002326_010 Hb_132880_010--Hb_002326_010 Hb_001593_040 Hb_001593_040 Hb_132880_010--Hb_001593_040 Hb_001397_020--Hb_010589_010 Hb_001397_020--Hb_002809_180 Hb_001397_020--Hb_003152_020 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_136408_040--Hb_007163_110 Hb_002062_010 Hb_002062_010 Hb_136408_040--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_136408_040--Hb_001512_130 Hb_000017_180 Hb_000017_180 Hb_136408_040--Hb_000017_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0427542 0.307918 3.97482 11.4665 0.0504636 0.0150702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0783292 0 0 0.370043 15.1354

CAGE analysis