Hb_000654_020

Information

Type -
Description -
Location Contig654: 46457-46795
Sequence    

Annotation

kegg
ID cic:CICLE_v10006262mg
description hypothetical protein
nr
ID XP_006421032.1
description hypothetical protein CICLE_v10006262mg [Citrus clementina]
swissprot
ID O23262
description Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
trembl
ID V4S1X0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006262mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000654_020 0.0 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
2 Hb_010883_160 0.0527804354 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
3 Hb_000809_010 0.0643922261 - - hypothetical protein JCGZ_12342 [Jatropha curcas]
4 Hb_005539_150 0.0734788235 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
5 Hb_008441_010 0.0767217135 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_002245_060 0.0768608035 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
7 Hb_000402_060 0.0831265519 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
8 Hb_000670_070 0.0847521892 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
9 Hb_002073_130 0.0889886699 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
10 Hb_000076_240 0.0896581613 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
11 Hb_001408_200 0.096514488 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
12 Hb_000477_090 0.1017805925 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
13 Hb_001397_020 0.1020193982 - - cytochrome P450 family protein [Populus trichocarpa]
14 Hb_007163_110 0.1033120861 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
15 Hb_132880_010 0.1065466645 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
16 Hb_000122_230 0.1066379353 - - laccase, putative [Ricinus communis]
17 Hb_003152_020 0.1068045634 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
18 Hb_011501_020 0.1071174631 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
19 Hb_003549_100 0.1100937752 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
20 Hb_121624_010 0.1104232181 - - PREDICTED: uncharacterized protein LOC105634410 [Jatropha curcas]

Gene co-expression network

sample Hb_000654_020 Hb_000654_020 Hb_010883_160 Hb_010883_160 Hb_000654_020--Hb_010883_160 Hb_000809_010 Hb_000809_010 Hb_000654_020--Hb_000809_010 Hb_005539_150 Hb_005539_150 Hb_000654_020--Hb_005539_150 Hb_008441_010 Hb_008441_010 Hb_000654_020--Hb_008441_010 Hb_002245_060 Hb_002245_060 Hb_000654_020--Hb_002245_060 Hb_000402_060 Hb_000402_060 Hb_000654_020--Hb_000402_060 Hb_001397_020 Hb_001397_020 Hb_010883_160--Hb_001397_020 Hb_000029_210 Hb_000029_210 Hb_010883_160--Hb_000029_210 Hb_003549_100 Hb_003549_100 Hb_010883_160--Hb_003549_100 Hb_010883_160--Hb_000402_060 Hb_000076_240 Hb_000076_240 Hb_010883_160--Hb_000076_240 Hb_000809_010--Hb_008441_010 Hb_000809_010--Hb_010883_160 Hb_002073_130 Hb_002073_130 Hb_000809_010--Hb_002073_130 Hb_132880_010 Hb_132880_010 Hb_000809_010--Hb_132880_010 Hb_000809_010--Hb_000076_240 Hb_000477_090 Hb_000477_090 Hb_005539_150--Hb_000477_090 Hb_029386_010 Hb_029386_010 Hb_005539_150--Hb_029386_010 Hb_005539_150--Hb_002245_060 Hb_008253_050 Hb_008253_050 Hb_005539_150--Hb_008253_050 Hb_000670_070 Hb_000670_070 Hb_005539_150--Hb_000670_070 Hb_041139_010 Hb_041139_010 Hb_008441_010--Hb_041139_010 Hb_008441_010--Hb_008253_050 Hb_001104_220 Hb_001104_220 Hb_008441_010--Hb_001104_220 Hb_008441_010--Hb_002073_130 Hb_000122_230 Hb_000122_230 Hb_002245_060--Hb_000122_230 Hb_007620_020 Hb_007620_020 Hb_002245_060--Hb_007620_020 Hb_002245_060--Hb_000670_070 Hb_001408_200 Hb_001408_200 Hb_002245_060--Hb_001408_200 Hb_000402_060--Hb_001408_200 Hb_003058_240 Hb_003058_240 Hb_000402_060--Hb_003058_240 Hb_002809_180 Hb_002809_180 Hb_000402_060--Hb_002809_180 Hb_000402_060--Hb_001397_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.470681 10.7525 33.8256 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.26192 45.692

CAGE analysis