Hb_007620_020

Information

Type -
Description -
Location Contig7620: 44554-48761
Sequence    

Annotation

kegg
ID rcu:RCOM_1542880
description cationic amino acid transporter, putative
nr
ID XP_012065465.1
description PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SQZ0
description Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1
trembl
ID A0A067LGI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24133 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007620_020 0.0 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_089124_010 0.039414038 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
3 Hb_000608_190 0.0557580186 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
4 Hb_000670_070 0.0702531709 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
5 Hb_004837_080 0.0706854121 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
6 Hb_002245_060 0.0802877356 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
7 Hb_000122_230 0.0841632256 - - laccase, putative [Ricinus communis]
8 Hb_080797_010 0.0861228691 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
9 Hb_001269_540 0.0919491753 - - hypothetical protein VITISV_038016 [Vitis vinifera]
10 Hb_003358_030 0.0942383426 - - ankyrin-kinase, putative [Ricinus communis]
11 Hb_000254_080 0.0963151767 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
12 Hb_002119_150 0.0983903087 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
13 Hb_000424_140 0.1045102627 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
14 Hb_001657_020 0.1099487975 - - heat shock family protein [Populus trichocarpa]
15 Hb_001097_140 0.1112259518 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000920_100 0.1132064162 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000665_210 0.1148744492 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
18 Hb_001408_200 0.1165031707 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
19 Hb_009421_070 0.1165507804 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
20 Hb_005539_150 0.1168187764 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]

Gene co-expression network

sample Hb_007620_020 Hb_007620_020 Hb_089124_010 Hb_089124_010 Hb_007620_020--Hb_089124_010 Hb_000608_190 Hb_000608_190 Hb_007620_020--Hb_000608_190 Hb_000670_070 Hb_000670_070 Hb_007620_020--Hb_000670_070 Hb_004837_080 Hb_004837_080 Hb_007620_020--Hb_004837_080 Hb_002245_060 Hb_002245_060 Hb_007620_020--Hb_002245_060 Hb_000122_230 Hb_000122_230 Hb_007620_020--Hb_000122_230 Hb_089124_010--Hb_000608_190 Hb_089124_010--Hb_004837_080 Hb_089124_010--Hb_000670_070 Hb_080797_010 Hb_080797_010 Hb_089124_010--Hb_080797_010 Hb_003358_030 Hb_003358_030 Hb_089124_010--Hb_003358_030 Hb_000608_190--Hb_000670_070 Hb_000424_140 Hb_000424_140 Hb_000608_190--Hb_000424_140 Hb_000608_190--Hb_003358_030 Hb_000958_090 Hb_000958_090 Hb_000608_190--Hb_000958_090 Hb_000670_070--Hb_000424_140 Hb_005842_010 Hb_005842_010 Hb_000670_070--Hb_005842_010 Hb_000654_020 Hb_000654_020 Hb_000670_070--Hb_000654_020 Hb_000670_070--Hb_002245_060 Hb_000254_080 Hb_000254_080 Hb_004837_080--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_004837_080--Hb_002119_150 Hb_001269_540 Hb_001269_540 Hb_004837_080--Hb_001269_540 Hb_004837_080--Hb_080797_010 Hb_004837_080--Hb_000122_230 Hb_002245_060--Hb_000122_230 Hb_002245_060--Hb_000654_020 Hb_001408_200 Hb_001408_200 Hb_002245_060--Hb_001408_200 Hb_005539_150 Hb_005539_150 Hb_002245_060--Hb_005539_150 Hb_000122_230--Hb_001408_200 Hb_000122_230--Hb_080797_010 Hb_000122_230--Hb_000254_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0755585 0.191175 0.561074 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0895273 0.989138

CAGE analysis