Hb_001486_280

Information

Type -
Description -
Location Contig1486: 207356-212021
Sequence    

Annotation

kegg
ID rcu:RCOM_1321910
description hypothetical protein
nr
ID XP_002525718.1
description hypothetical protein RCOM_1321910 [Ricinus communis]
swissprot
ID D9UBX6
description Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1
trembl
ID B9SI99
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1321910 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12267: 207768-208663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_280 0.0 - - hypothetical protein RCOM_1321910 [Ricinus communis]
2 Hb_000270_380 0.0730661241 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
3 Hb_012098_160 0.0743341874 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
4 Hb_009023_010 0.0890366806 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
5 Hb_002485_010 0.08920062 - - PREDICTED: extensin [Jatropha curcas]
6 Hb_000904_120 0.0899377947 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012484_050 0.0920353171 - - PREDICTED: kinesin KP1 [Jatropha curcas]
8 Hb_001951_080 0.0935818029 - - O-acetyltransferase, putative [Ricinus communis]
9 Hb_001512_130 0.0948317189 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
10 Hb_000345_550 0.0971635648 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
11 Hb_015561_010 0.1011344996 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000012_330 0.1040621153 - - pollen specific protein sf21, putative [Ricinus communis]
13 Hb_000622_050 0.1046027914 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003032_030 0.1074299158 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
15 Hb_005694_160 0.1109196929 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001032_020 0.113583828 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_007163_100 0.1138392506 - - BnaC03g52280D [Brassica napus]
18 Hb_005784_010 0.1155997376 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
19 Hb_005295_020 0.1191860188 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
20 Hb_002999_070 0.1196914062 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001486_280 Hb_001486_280 Hb_000270_380 Hb_000270_380 Hb_001486_280--Hb_000270_380 Hb_012098_160 Hb_012098_160 Hb_001486_280--Hb_012098_160 Hb_009023_010 Hb_009023_010 Hb_001486_280--Hb_009023_010 Hb_002485_010 Hb_002485_010 Hb_001486_280--Hb_002485_010 Hb_000904_120 Hb_000904_120 Hb_001486_280--Hb_000904_120 Hb_012484_050 Hb_012484_050 Hb_001486_280--Hb_012484_050 Hb_000270_380--Hb_009023_010 Hb_000270_380--Hb_012098_160 Hb_015561_010 Hb_015561_010 Hb_000270_380--Hb_015561_010 Hb_001512_130 Hb_001512_130 Hb_000270_380--Hb_001512_130 Hb_000336_290 Hb_000336_290 Hb_000270_380--Hb_000336_290 Hb_007163_100 Hb_007163_100 Hb_012098_160--Hb_007163_100 Hb_012098_160--Hb_009023_010 Hb_012098_160--Hb_000904_120 Hb_012098_160--Hb_015561_010 Hb_009023_010--Hb_015561_010 Hb_005762_010 Hb_005762_010 Hb_009023_010--Hb_005762_010 Hb_002062_010 Hb_002062_010 Hb_009023_010--Hb_002062_010 Hb_009023_010--Hb_001512_130 Hb_003032_030 Hb_003032_030 Hb_002485_010--Hb_003032_030 Hb_001032_020 Hb_001032_020 Hb_002485_010--Hb_001032_020 Hb_002485_010--Hb_009023_010 Hb_000345_550 Hb_000345_550 Hb_002485_010--Hb_000345_550 Hb_002485_010--Hb_000270_380 Hb_000031_180 Hb_000031_180 Hb_000904_120--Hb_000031_180 Hb_000904_120--Hb_007163_100 Hb_000904_120--Hb_015561_010 Hb_000329_780 Hb_000329_780 Hb_000904_120--Hb_000329_780 Hb_002119_100 Hb_002119_100 Hb_000904_120--Hb_002119_100 Hb_001951_080 Hb_001951_080 Hb_012484_050--Hb_001951_080 Hb_012484_050--Hb_007163_100 Hb_012484_050--Hb_012098_160 Hb_012484_050--Hb_001512_130 Hb_000012_330 Hb_000012_330 Hb_012484_050--Hb_000012_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110297 0.601114 2.08443 3.94399 0.145305 0.0647614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10614 3.35086

CAGE analysis