Hb_000336_290

Information

Type -
Description -
Location Contig336: 362961-367383
Sequence    

Annotation

kegg
ID rcu:RCOM_1678470
description leucine-rich repeat protein, putative (EC:1.3.1.74)
nr
ID XP_002509547.1
description leucine-rich repeat protein, putative [Ricinus communis]
swissprot
ID Q8LFN2
description Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1
trembl
ID B9RBL3
description Leucine-rich repeat protein, putative OS=Ricinus communis GN=RCOM_1678470 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive leucine-rich repeat receptor-like protein kinase at3g03770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_290 0.0 - - leucine-rich repeat protein, putative [Ricinus communis]
2 Hb_000500_240 0.0838354636 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000270_380 0.0856654892 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
4 Hb_000031_180 0.0878792911 - - sarcosine oxidase, putative [Ricinus communis]
5 Hb_000599_150 0.0936239483 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
6 Hb_005694_160 0.0948343938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000329_440 0.0988444279 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
8 Hb_000904_120 0.0994662397 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001047_210 0.0998045204 - - PSI reaction center subunit II [Citrus sinensis]
10 Hb_005532_030 0.1001295113 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000520_040 0.1007525278 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
12 Hb_000329_780 0.1016167767 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
13 Hb_002246_030 0.1039457029 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_005337_100 0.10428682 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
15 Hb_002374_180 0.1042891453 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
16 Hb_004032_280 0.1054326102 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
17 Hb_002600_170 0.1063058135 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002119_100 0.1077974455 - - cytochrome B561, putative [Ricinus communis]
19 Hb_002572_040 0.1081654664 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
20 Hb_015561_010 0.1086775149 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000336_290 Hb_000336_290 Hb_000500_240 Hb_000500_240 Hb_000336_290--Hb_000500_240 Hb_000270_380 Hb_000270_380 Hb_000336_290--Hb_000270_380 Hb_000031_180 Hb_000031_180 Hb_000336_290--Hb_000031_180 Hb_000599_150 Hb_000599_150 Hb_000336_290--Hb_000599_150 Hb_005694_160 Hb_005694_160 Hb_000336_290--Hb_005694_160 Hb_000329_440 Hb_000329_440 Hb_000336_290--Hb_000329_440 Hb_000520_040 Hb_000520_040 Hb_000500_240--Hb_000520_040 Hb_000500_240--Hb_005694_160 Hb_000500_240--Hb_000329_440 Hb_102179_010 Hb_102179_010 Hb_000500_240--Hb_102179_010 Hb_001047_210 Hb_001047_210 Hb_000500_240--Hb_001047_210 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780 Hb_009023_010 Hb_009023_010 Hb_000270_380--Hb_009023_010 Hb_012098_160 Hb_012098_160 Hb_000270_380--Hb_012098_160 Hb_001486_280 Hb_001486_280 Hb_000270_380--Hb_001486_280 Hb_015561_010 Hb_015561_010 Hb_000270_380--Hb_015561_010 Hb_001512_130 Hb_001512_130 Hb_000270_380--Hb_001512_130 Hb_000031_180--Hb_000599_150 Hb_000031_180--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_000031_180--Hb_004032_280 Hb_027472_060 Hb_027472_060 Hb_000031_180--Hb_027472_060 Hb_002119_100 Hb_002119_100 Hb_000031_180--Hb_002119_100 Hb_006831_090 Hb_006831_090 Hb_000031_180--Hb_006831_090 Hb_000599_150--Hb_004032_280 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000599_150--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_000599_150--Hb_002572_040 Hb_007483_090 Hb_007483_090 Hb_000599_150--Hb_007483_090 Hb_002246_030 Hb_002246_030 Hb_005694_160--Hb_002246_030 Hb_005694_160--Hb_000520_040 Hb_005694_160--Hb_000329_440 Hb_005694_160--Hb_102179_010 Hb_005694_160--Hb_015561_010 Hb_000329_440--Hb_000520_040 Hb_001098_040 Hb_001098_040 Hb_000329_440--Hb_001098_040 Hb_004835_020 Hb_004835_020 Hb_000329_440--Hb_004835_020 Hb_000329_440--Hb_102179_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00833975 0.156787 0.837082 1.13902 0.0239617 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0283644 0.0295967 1.35976

CAGE analysis