Hb_000500_240

Information

Type -
Description -
Location Contig500: 174627-175548
Sequence    

Annotation

kegg
ID rcu:RCOM_0634800
description hypothetical protein
nr
ID XP_002519754.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S185
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0634800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000520_040 0.0450979183 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
3 Hb_005694_160 0.0471070105 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000329_440 0.067211979 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
5 Hb_102179_010 0.0672170343 - - protein binding protein, putative [Ricinus communis]
6 Hb_001047_210 0.072710948 - - PSI reaction center subunit II [Citrus sinensis]
7 Hb_000329_780 0.0776647915 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
8 Hb_005337_100 0.0778670948 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
9 Hb_060253_010 0.0804387491 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
10 Hb_002246_030 0.0813080341 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_000336_290 0.0838354636 - - leucine-rich repeat protein, putative [Ricinus communis]
12 Hb_002066_110 0.0872698771 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
13 Hb_000046_120 0.0878037616 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
14 Hb_008536_020 0.0878409715 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
15 Hb_002572_040 0.0882496391 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
16 Hb_015561_010 0.0894146138 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004835_020 0.0905909693 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_002374_180 0.09094646 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
19 Hb_002600_170 0.0919520678 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007483_090 0.0929952377 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000500_240 Hb_000500_240 Hb_000520_040 Hb_000520_040 Hb_000500_240--Hb_000520_040 Hb_005694_160 Hb_005694_160 Hb_000500_240--Hb_005694_160 Hb_000329_440 Hb_000329_440 Hb_000500_240--Hb_000329_440 Hb_102179_010 Hb_102179_010 Hb_000500_240--Hb_102179_010 Hb_001047_210 Hb_001047_210 Hb_000500_240--Hb_001047_210 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780 Hb_000520_040--Hb_001047_210 Hb_000520_040--Hb_000329_440 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_002246_030 Hb_002246_030 Hb_005694_160--Hb_002246_030 Hb_005694_160--Hb_000520_040 Hb_005694_160--Hb_000329_440 Hb_005694_160--Hb_102179_010 Hb_015561_010 Hb_015561_010 Hb_005694_160--Hb_015561_010 Hb_001098_040 Hb_001098_040 Hb_000329_440--Hb_001098_040 Hb_004835_020 Hb_004835_020 Hb_000329_440--Hb_004835_020 Hb_000329_440--Hb_102179_010 Hb_102179_010--Hb_004835_020 Hb_102179_010--Hb_002246_030 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_102179_010--Hb_001047_210 Hb_102179_010--Hb_000520_040 Hb_001047_210--Hb_002246_030 Hb_000958_090 Hb_000958_090 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_006831_090 Hb_006831_090 Hb_000329_780--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_000329_780--Hb_002600_170 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_000329_780--Hb_008536_020 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.927197 4.0075 5.24363 0.0419339 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.248819 6.35127

CAGE analysis