Hb_001032_020

Information

Type -
Description -
Location Contig1032: 32466-36242
Sequence    

Annotation

kegg
ID tcc:TCM_042938
description Ankyrin repeat family protein
nr
ID BAG15869.1
description ankyrin repeat protein [Bruguiera gymnorhiza]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B1Q4U3
description Ankyrin repeat protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01307: 34848-35249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001032_020 0.0 - - ankyrin repeat protein [Bruguiera gymnorhiza]
2 Hb_001674_010 0.0796590171 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
3 Hb_008054_030 0.0873044794 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
4 Hb_002066_110 0.0874556214 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
5 Hb_012098_160 0.0887856289 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
6 Hb_007163_100 0.0895236693 - - BnaC03g52280D [Brassica napus]
7 Hb_015561_010 0.0900392549 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001095_020 0.0941089035 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
9 Hb_003339_010 0.0945358021 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
10 Hb_001545_020 0.0946096736 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
11 Hb_002150_090 0.0966565815 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
12 Hb_002485_010 0.0967213791 - - PREDICTED: extensin [Jatropha curcas]
13 Hb_000617_360 0.0971047226 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012484_050 0.097282591 - - PREDICTED: kinesin KP1 [Jatropha curcas]
15 Hb_000718_060 0.097283735 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
16 Hb_000878_050 0.0974932414 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
17 Hb_008221_200 0.0991402174 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
18 Hb_005762_010 0.0992803621 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
19 Hb_000028_190 0.0998813338 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
20 Hb_005694_160 0.1018584623 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001032_020 Hb_001032_020 Hb_001674_010 Hb_001674_010 Hb_001032_020--Hb_001674_010 Hb_008054_030 Hb_008054_030 Hb_001032_020--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_001032_020--Hb_002066_110 Hb_012098_160 Hb_012098_160 Hb_001032_020--Hb_012098_160 Hb_007163_100 Hb_007163_100 Hb_001032_020--Hb_007163_100 Hb_015561_010 Hb_015561_010 Hb_001032_020--Hb_015561_010 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001095_020 Hb_001095_020 Hb_001674_010--Hb_001095_020 Hb_000028_190 Hb_000028_190 Hb_001674_010--Hb_000028_190 Hb_000009_270 Hb_000009_270 Hb_001674_010--Hb_000009_270 Hb_002150_090 Hb_002150_090 Hb_001674_010--Hb_002150_090 Hb_001674_010--Hb_002066_110 Hb_003339_010 Hb_003339_010 Hb_008054_030--Hb_003339_010 Hb_008054_030--Hb_000028_190 Hb_008054_030--Hb_007163_100 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_008054_030--Hb_002150_090 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_002066_110--Hb_002150_090 Hb_002066_110--Hb_001095_020 Hb_002066_110--Hb_008054_030 Hb_002066_110--Hb_003339_010 Hb_000617_360 Hb_000617_360 Hb_002066_110--Hb_000617_360 Hb_000270_380 Hb_000270_380 Hb_012098_160--Hb_000270_380 Hb_012098_160--Hb_007163_100 Hb_009023_010 Hb_009023_010 Hb_012098_160--Hb_009023_010 Hb_001486_280 Hb_001486_280 Hb_012098_160--Hb_001486_280 Hb_000904_120 Hb_000904_120 Hb_012098_160--Hb_000904_120 Hb_012098_160--Hb_015561_010 Hb_007163_100--Hb_002150_090 Hb_007163_100--Hb_000028_190 Hb_007163_100--Hb_003339_010 Hb_007163_100--Hb_001095_020 Hb_002062_010 Hb_002062_010 Hb_015561_010--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_015561_010--Hb_001512_130 Hb_002119_100 Hb_002119_100 Hb_015561_010--Hb_002119_100 Hb_015561_010--Hb_009023_010 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104305 0.566766 0.808912 0.0143465 0.0134427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.043934 0.572383

CAGE analysis