Hb_006242_050

Information

Type -
Description -
Location Contig6242: 85982-89520
Sequence    

Annotation

kegg
ID rcu:RCOM_1537760
description Osmotin precursor, putative
nr
ID XP_002519620.1
description Osmotin precursor, putative [Ricinus communis]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID B9S0V1
description Osmotin, putative OS=Ricinus communis GN=RCOM_1537760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51625: 88416-89144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006242_050 0.0 - - Osmotin precursor, putative [Ricinus communis]
2 Hb_143629_170 0.0618166511 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
3 Hb_003417_050 0.0646654572 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_005842_010 0.0650320325 - - nitrate transporter, putative [Ricinus communis]
5 Hb_128986_010 0.0685890781 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007163_110 0.0697689364 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
7 Hb_007483_090 0.0719364189 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002740_050 0.0741912605 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
9 Hb_015561_010 0.0746774896 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002572_040 0.0758150762 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
11 Hb_005656_120 0.0795862468 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
12 Hb_000017_180 0.0804880283 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
13 Hb_002062_010 0.0812808741 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
14 Hb_000329_780 0.0830201765 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
15 Hb_002150_090 0.0856426157 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
16 Hb_002119_100 0.0860076919 - - cytochrome B561, putative [Ricinus communis]
17 Hb_027472_060 0.086261086 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
18 Hb_003855_060 0.0909778348 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
19 Hb_001512_130 0.0925688924 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
20 Hb_007163_100 0.0929562896 - - BnaC03g52280D [Brassica napus]

Gene co-expression network

sample Hb_006242_050 Hb_006242_050 Hb_143629_170 Hb_143629_170 Hb_006242_050--Hb_143629_170 Hb_003417_050 Hb_003417_050 Hb_006242_050--Hb_003417_050 Hb_005842_010 Hb_005842_010 Hb_006242_050--Hb_005842_010 Hb_128986_010 Hb_128986_010 Hb_006242_050--Hb_128986_010 Hb_007163_110 Hb_007163_110 Hb_006242_050--Hb_007163_110 Hb_007483_090 Hb_007483_090 Hb_006242_050--Hb_007483_090 Hb_143629_170--Hb_128986_010 Hb_002740_050 Hb_002740_050 Hb_143629_170--Hb_002740_050 Hb_004943_020 Hb_004943_020 Hb_143629_170--Hb_004943_020 Hb_143629_170--Hb_003417_050 Hb_003855_060 Hb_003855_060 Hb_143629_170--Hb_003855_060 Hb_003417_050--Hb_128986_010 Hb_003417_050--Hb_007483_090 Hb_002062_010 Hb_002062_010 Hb_003417_050--Hb_002062_010 Hb_002119_100 Hb_002119_100 Hb_003417_050--Hb_002119_100 Hb_005656_120 Hb_005656_120 Hb_003417_050--Hb_005656_120 Hb_000424_140 Hb_000424_140 Hb_005842_010--Hb_000424_140 Hb_005842_010--Hb_007163_110 Hb_000670_070 Hb_000670_070 Hb_005842_010--Hb_000670_070 Hb_009421_070 Hb_009421_070 Hb_005842_010--Hb_009421_070 Hb_027472_060 Hb_027472_060 Hb_005842_010--Hb_027472_060 Hb_128986_010--Hb_002062_010 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_128986_010--Hb_005656_120 Hb_128986_010--Hb_007483_090 Hb_003152_020 Hb_003152_020 Hb_007163_110--Hb_003152_020 Hb_136408_040 Hb_136408_040 Hb_007163_110--Hb_136408_040 Hb_000017_180 Hb_000017_180 Hb_007163_110--Hb_000017_180 Hb_004650_110 Hb_004650_110 Hb_007163_110--Hb_004650_110 Hb_007483_090--Hb_002119_100 Hb_000329_780 Hb_000329_780 Hb_007483_090--Hb_000329_780 Hb_007483_090--Hb_002062_010 Hb_015561_010 Hb_015561_010 Hb_007483_090--Hb_015561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0816432 0.664456 1.34639 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0854895 1.17115

CAGE analysis