Hb_009421_070

Information

Type -
Description -
Location Contig9421: 73645-75461
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11140g
description POPTRDRAFT_819965; hypothetical protein
nr
ID XP_012079220.1
description PREDICTED: cell number regulator 1-like [Jatropha curcas]
swissprot
ID B6TZ45
description Cell number regulator 1 OS=Zea mays GN=CNR1 PE=2 SV=1
trembl
ID A0A067KI20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12381 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63211: 74272-74705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009421_070 0.0 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
2 Hb_000665_210 0.0598198097 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
3 Hb_001206_100 0.0660793024 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
4 Hb_001098_040 0.0661383368 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
5 Hb_000784_060 0.0711542683 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005842_010 0.0728259575 - - nitrate transporter, putative [Ricinus communis]
7 Hb_004032_190 0.0748692726 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
8 Hb_000424_140 0.0803718751 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
9 Hb_002942_200 0.0828755745 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
10 Hb_001296_060 0.0836148701 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
11 Hb_016277_030 0.0843294073 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
12 Hb_004466_090 0.0884536962 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000977_020 0.0896148916 - - beta-hexosaminidase, putative [Ricinus communis]
14 Hb_000329_440 0.0932219984 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
15 Hb_000076_060 0.0932309521 - - hypothetical protein RCOM_0586940 [Ricinus communis]
16 Hb_000670_070 0.0982884692 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
17 Hb_005183_100 0.0992207675 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
18 Hb_001369_390 0.1037126775 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
19 Hb_005569_010 0.1068835699 - - Heme-binding protein, putative [Ricinus communis]
20 Hb_000364_090 0.1075929263 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009421_070 Hb_009421_070 Hb_000665_210 Hb_000665_210 Hb_009421_070--Hb_000665_210 Hb_001206_100 Hb_001206_100 Hb_009421_070--Hb_001206_100 Hb_001098_040 Hb_001098_040 Hb_009421_070--Hb_001098_040 Hb_000784_060 Hb_000784_060 Hb_009421_070--Hb_000784_060 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_004032_190 Hb_004032_190 Hb_009421_070--Hb_004032_190 Hb_000665_210--Hb_000784_060 Hb_000665_210--Hb_001098_040 Hb_000076_060 Hb_000076_060 Hb_000665_210--Hb_000076_060 Hb_000424_140 Hb_000424_140 Hb_000665_210--Hb_000424_140 Hb_000977_020 Hb_000977_020 Hb_000665_210--Hb_000977_020 Hb_005183_100 Hb_005183_100 Hb_001206_100--Hb_005183_100 Hb_002942_200 Hb_002942_200 Hb_001206_100--Hb_002942_200 Hb_009522_020 Hb_009522_020 Hb_001206_100--Hb_009522_020 Hb_016277_030 Hb_016277_030 Hb_001206_100--Hb_016277_030 Hb_001206_100--Hb_004032_190 Hb_001098_040--Hb_002942_200 Hb_000329_440 Hb_000329_440 Hb_001098_040--Hb_000329_440 Hb_060253_010 Hb_060253_010 Hb_001098_040--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_001098_040--Hb_000627_050 Hb_001098_040--Hb_000977_020 Hb_004466_090 Hb_004466_090 Hb_000784_060--Hb_004466_090 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390 Hb_004374_030 Hb_004374_030 Hb_000784_060--Hb_004374_030 Hb_000784_060--Hb_016277_030 Hb_006242_050 Hb_006242_050 Hb_005842_010--Hb_006242_050 Hb_005842_010--Hb_000424_140 Hb_007163_110 Hb_007163_110 Hb_005842_010--Hb_007163_110 Hb_000670_070 Hb_000670_070 Hb_005842_010--Hb_000670_070 Hb_027472_060 Hb_027472_060 Hb_005842_010--Hb_027472_060 Hb_000364_090 Hb_000364_090 Hb_004032_190--Hb_000364_090 Hb_004032_190--Hb_016277_030 Hb_004032_190--Hb_004466_090 Hb_004032_190--Hb_000784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.233646 0.715934 1.42366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.220865 1.70526

CAGE analysis