Hb_002815_020

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2815: 60874-62908
Sequence    

Annotation

kegg
ID rcu:RCOM_1235500
description transcription factor, putative
nr
ID XP_007022785.1
description Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID A0A061FAD9
description Homeodomain-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_033672 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor apl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002815_020 0.0 transcription factor TF Family: G2-like Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]
2 Hb_003125_210 0.1039646853 - - Phospholipase C 4 precursor, putative [Ricinus communis]
3 Hb_001159_230 0.1088944785 - - Kinesin heavy chain, putative [Ricinus communis]
4 Hb_000544_190 0.1211371055 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_006002_050 0.134419305 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
6 Hb_004696_010 0.1358775663 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
7 Hb_012395_110 0.1371389848 - - PREDICTED: peroxygenase [Jatropha curcas]
8 Hb_000345_550 0.1402913379 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
9 Hb_003054_070 0.1403072548 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
10 Hb_005695_100 0.1434576062 - - PREDICTED: uncharacterized protein LOC105638839 [Jatropha curcas]
11 Hb_001951_080 0.1469797698 - - O-acetyltransferase, putative [Ricinus communis]
12 Hb_000417_050 0.147161095 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
13 Hb_000103_130 0.1504549286 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
14 Hb_002073_170 0.153271996 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
15 Hb_003086_030 0.1534075426 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
16 Hb_005784_010 0.1546889016 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
17 Hb_000417_210 0.1555792516 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_002272_120 0.1556375848 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
19 Hb_000820_110 0.1560582491 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
20 Hb_000160_250 0.1564033843 - - Uncharacterized protein TCM_019235 [Theobroma cacao]

Gene co-expression network

sample Hb_002815_020 Hb_002815_020 Hb_003125_210 Hb_003125_210 Hb_002815_020--Hb_003125_210 Hb_001159_230 Hb_001159_230 Hb_002815_020--Hb_001159_230 Hb_000544_190 Hb_000544_190 Hb_002815_020--Hb_000544_190 Hb_006002_050 Hb_006002_050 Hb_002815_020--Hb_006002_050 Hb_004696_010 Hb_004696_010 Hb_002815_020--Hb_004696_010 Hb_012395_110 Hb_012395_110 Hb_002815_020--Hb_012395_110 Hb_009113_080 Hb_009113_080 Hb_003125_210--Hb_009113_080 Hb_003125_210--Hb_004696_010 Hb_003086_030 Hb_003086_030 Hb_003125_210--Hb_003086_030 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_010222_040 Hb_010222_040 Hb_003125_210--Hb_010222_040 Hb_000878_050 Hb_000878_050 Hb_001159_230--Hb_000878_050 Hb_001159_230--Hb_006002_050 Hb_001095_020 Hb_001095_020 Hb_001159_230--Hb_001095_020 Hb_001159_230--Hb_004696_010 Hb_004435_020 Hb_004435_020 Hb_001159_230--Hb_004435_020 Hb_005976_110 Hb_005976_110 Hb_001159_230--Hb_005976_110 Hb_000302_320 Hb_000302_320 Hb_000544_190--Hb_000302_320 Hb_003054_070 Hb_003054_070 Hb_000544_190--Hb_003054_070 Hb_000544_190--Hb_003125_210 Hb_023308_010 Hb_023308_010 Hb_000544_190--Hb_023308_010 Hb_011861_090 Hb_011861_090 Hb_000544_190--Hb_011861_090 Hb_000011_280 Hb_000011_280 Hb_006002_050--Hb_000011_280 Hb_000997_080 Hb_000997_080 Hb_006002_050--Hb_000997_080 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_002783_280 Hb_002783_280 Hb_006002_050--Hb_002783_280 Hb_000297_140 Hb_000297_140 Hb_006002_050--Hb_000297_140 Hb_011918_070 Hb_011918_070 Hb_004696_010--Hb_011918_070 Hb_003580_050 Hb_003580_050 Hb_004696_010--Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_004007_070 Hb_004007_070 Hb_012395_110--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_012395_110--Hb_000086_090 Hb_004241_110 Hb_004241_110 Hb_012395_110--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_012395_110--Hb_001102_160 Hb_084147_010 Hb_084147_010 Hb_012395_110--Hb_084147_010 Hb_019516_060 Hb_019516_060 Hb_012395_110--Hb_019516_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.648361 2.02105 4.30236 0.0452772 0.0875658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0359151 0.0282534 0.316911 0.248552 2.46905

CAGE analysis