Hb_011861_090

Information

Type -
Description -
Location Contig11861: 104971-106467
Sequence    

Annotation

kegg
ID atr:s00033p00176860
description AMTR_s00033p00176860; hypothetical protein
nr
ID XP_012073098.1
description PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
swissprot
ID Q8IZM9
description Probable sodium-coupled neutral amino acid transporter 6 OS=Homo sapiens GN=SLC38A6 PE=1 SV=2
trembl
ID A0A067KLA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06087 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable sodium-coupled neutral amino acid transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_090 0.0 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
2 Hb_166635_010 0.1384363161 - - ptm1, putative [Ricinus communis]
3 Hb_000302_320 0.1407979542 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
4 Hb_000544_190 0.1548040981 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_010883_180 0.172623591 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
6 Hb_000389_040 0.1805329997 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
7 Hb_023308_010 0.1860240674 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
8 Hb_000054_010 0.1876959454 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_012090_030 0.190009037 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
10 Hb_000975_200 0.1903752379 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
11 Hb_002600_120 0.1943021686 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
12 Hb_000297_140 0.1947176864 - - hypothetical protein RCOM_0293450 [Ricinus communis]
13 Hb_002890_110 0.1950409532 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
14 Hb_116210_010 0.195630231 - - protein with unknown function [Ricinus communis]
15 Hb_000003_110 0.1956614322 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_002759_030 0.1957733489 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
17 Hb_030565_100 0.1959712925 - - serine hydroxymethyltransferase, putative [Ricinus communis]
18 Hb_002233_160 0.1961994644 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
19 Hb_006002_050 0.1987202337 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
20 Hb_000011_280 0.198731086 - - pectinesterase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_011861_090 Hb_011861_090 Hb_166635_010 Hb_166635_010 Hb_011861_090--Hb_166635_010 Hb_000302_320 Hb_000302_320 Hb_011861_090--Hb_000302_320 Hb_000544_190 Hb_000544_190 Hb_011861_090--Hb_000544_190 Hb_010883_180 Hb_010883_180 Hb_011861_090--Hb_010883_180 Hb_000389_040 Hb_000389_040 Hb_011861_090--Hb_000389_040 Hb_023308_010 Hb_023308_010 Hb_011861_090--Hb_023308_010 Hb_001366_110 Hb_001366_110 Hb_166635_010--Hb_001366_110 Hb_000054_010 Hb_000054_010 Hb_166635_010--Hb_000054_010 Hb_000236_290 Hb_000236_290 Hb_166635_010--Hb_000236_290 Hb_166635_010--Hb_000302_320 Hb_004052_190 Hb_004052_190 Hb_166635_010--Hb_004052_190 Hb_002759_030 Hb_002759_030 Hb_000302_320--Hb_002759_030 Hb_000302_320--Hb_000544_190 Hb_000302_320--Hb_000236_290 Hb_002783_280 Hb_002783_280 Hb_000302_320--Hb_002783_280 Hb_000009_280 Hb_000009_280 Hb_000302_320--Hb_000009_280 Hb_002815_020 Hb_002815_020 Hb_000544_190--Hb_002815_020 Hb_003054_070 Hb_003054_070 Hb_000544_190--Hb_003054_070 Hb_003125_210 Hb_003125_210 Hb_000544_190--Hb_003125_210 Hb_000544_190--Hb_023308_010 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_000260_110 Hb_000260_110 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090 Hb_000389_040--Hb_103942_030 Hb_000995_020 Hb_000995_020 Hb_000389_040--Hb_000995_020 Hb_133279_010 Hb_133279_010 Hb_000389_040--Hb_133279_010 Hb_000389_040--Hb_010883_180 Hb_102772_010 Hb_102772_010 Hb_000389_040--Hb_102772_010 Hb_154038_040 Hb_154038_040 Hb_023308_010--Hb_154038_040 Hb_000457_120 Hb_000457_120 Hb_023308_010--Hb_000457_120 Hb_004117_020 Hb_004117_020 Hb_023308_010--Hb_004117_020 Hb_001360_020 Hb_001360_020 Hb_023308_010--Hb_001360_020 Hb_000928_200 Hb_000928_200 Hb_023308_010--Hb_000928_200 Hb_001688_030 Hb_001688_030 Hb_023308_010--Hb_001688_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0865288 0.262936 1.51894 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0246254 0.18505 0.147446 0.515133

CAGE analysis