Hb_000302_320

Information

Type -
Description -
Location Contig302: 222192-224060
Sequence    

Annotation

kegg
ID pop:POPTR_0017s01210g
description hypothetical protein
nr
ID KDP22226.1
description hypothetical protein JCGZ_26057 [Jatropha curcas]
swissprot
ID Q3EDL4
description Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2
trembl
ID A0A067JEF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26057 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable serine threonine-protein kinase at1g01540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_320 0.0 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
2 Hb_002759_030 0.1285381959 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
3 Hb_000544_190 0.1360715181 - - ARF GTPase activator, putative [Ricinus communis]
4 Hb_000236_290 0.140380638 - - organic anion transporter, putative [Ricinus communis]
5 Hb_011861_090 0.1407979542 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
6 Hb_002783_280 0.143033762 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
7 Hb_000009_280 0.1467701665 - - Calmodulin, putative [Ricinus communis]
8 Hb_006002_050 0.1469543214 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
9 Hb_005305_040 0.1476933804 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
10 Hb_000230_410 0.1483864458 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
11 Hb_000579_110 0.1488258804 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
12 Hb_002073_270 0.1535703557 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_013749_040 0.1576023383 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
14 Hb_002233_160 0.1577320249 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
15 Hb_004032_290 0.1578887875 - - protein binding protein, putative [Ricinus communis]
16 Hb_004650_120 0.1582264523 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
17 Hb_005914_120 0.1584566019 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
18 Hb_004785_220 0.158458913 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
19 Hb_004020_030 0.1587620208 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
20 Hb_000676_230 0.1620886729 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000302_320 Hb_000302_320 Hb_002759_030 Hb_002759_030 Hb_000302_320--Hb_002759_030 Hb_000544_190 Hb_000544_190 Hb_000302_320--Hb_000544_190 Hb_000236_290 Hb_000236_290 Hb_000302_320--Hb_000236_290 Hb_011861_090 Hb_011861_090 Hb_000302_320--Hb_011861_090 Hb_002783_280 Hb_002783_280 Hb_000302_320--Hb_002783_280 Hb_000009_280 Hb_000009_280 Hb_000302_320--Hb_000009_280 Hb_005305_040 Hb_005305_040 Hb_002759_030--Hb_005305_040 Hb_001195_710 Hb_001195_710 Hb_002759_030--Hb_001195_710 Hb_014361_010 Hb_014361_010 Hb_002759_030--Hb_014361_010 Hb_000457_120 Hb_000457_120 Hb_002759_030--Hb_000457_120 Hb_000928_200 Hb_000928_200 Hb_002759_030--Hb_000928_200 Hb_001001_070 Hb_001001_070 Hb_002759_030--Hb_001001_070 Hb_002815_020 Hb_002815_020 Hb_000544_190--Hb_002815_020 Hb_003054_070 Hb_003054_070 Hb_000544_190--Hb_003054_070 Hb_003125_210 Hb_003125_210 Hb_000544_190--Hb_003125_210 Hb_023308_010 Hb_023308_010 Hb_000544_190--Hb_023308_010 Hb_000544_190--Hb_011861_090 Hb_019516_070 Hb_019516_070 Hb_000236_290--Hb_019516_070 Hb_003177_040 Hb_003177_040 Hb_000236_290--Hb_003177_040 Hb_000108_180 Hb_000108_180 Hb_000236_290--Hb_000108_180 Hb_008461_060 Hb_008461_060 Hb_000236_290--Hb_008461_060 Hb_005295_020 Hb_005295_020 Hb_000236_290--Hb_005295_020 Hb_001699_080 Hb_001699_080 Hb_000236_290--Hb_001699_080 Hb_166635_010 Hb_166635_010 Hb_011861_090--Hb_166635_010 Hb_010883_180 Hb_010883_180 Hb_011861_090--Hb_010883_180 Hb_000389_040 Hb_000389_040 Hb_011861_090--Hb_000389_040 Hb_011861_090--Hb_023308_010 Hb_000317_380 Hb_000317_380 Hb_002783_280--Hb_000317_380 Hb_006002_050 Hb_006002_050 Hb_002783_280--Hb_006002_050 Hb_007122_020 Hb_007122_020 Hb_002783_280--Hb_007122_020 Hb_000140_320 Hb_000140_320 Hb_002783_280--Hb_000140_320 Hb_162472_010 Hb_162472_010 Hb_002783_280--Hb_162472_010 Hb_000413_120 Hb_000413_120 Hb_002783_280--Hb_000413_120 Hb_000230_410 Hb_000230_410 Hb_000009_280--Hb_000230_410 Hb_007185_050 Hb_007185_050 Hb_000009_280--Hb_007185_050 Hb_004650_120 Hb_004650_120 Hb_000009_280--Hb_004650_120 Hb_001136_040 Hb_001136_040 Hb_000009_280--Hb_001136_040 Hb_004032_290 Hb_004032_290 Hb_000009_280--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_000009_280--Hb_002874_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0788247 0.229607 0.992888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0284289 0.0531341 0.022738 0.413958

CAGE analysis