Hb_019516_070

Information

Type -
Description -
Location Contig19516: 58753-60186
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06360g
description POPTRDRAFT_758701; hypothetical protein
nr
ID XP_012072486.1
description PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04617 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019516_070 0.0 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
2 Hb_000820_110 0.0955910803 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
3 Hb_000236_290 0.1099840863 - - organic anion transporter, putative [Ricinus communis]
4 Hb_003177_040 0.1176298801 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
5 Hb_001159_230 0.1260632299 - - Kinesin heavy chain, putative [Ricinus communis]
6 Hb_005730_060 0.1289865932 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
7 Hb_001699_080 0.1292900549 - - unnamed protein product [Coffea canephora]
8 Hb_006157_010 0.1307113905 - - PREDICTED: endoglucanase 5 [Jatropha curcas]
9 Hb_006002_050 0.1312681894 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
10 Hb_000922_400 0.1324218227 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
11 Hb_002081_020 0.1341903665 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
12 Hb_010810_060 0.1355451006 - - sterol desaturase, putative [Ricinus communis]
13 Hb_019516_060 0.1384721886 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
14 Hb_000297_140 0.1418315691 - - hypothetical protein RCOM_0293450 [Ricinus communis]
15 Hb_000108_180 0.1440553033 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
16 Hb_000193_210 0.1451427785 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
17 Hb_005295_020 0.1466121552 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
18 Hb_012055_070 0.1486313281 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_003097_160 0.1510790375 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
20 Hb_013749_040 0.1518970328 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]

Gene co-expression network

sample Hb_019516_070 Hb_019516_070 Hb_000820_110 Hb_000820_110 Hb_019516_070--Hb_000820_110 Hb_000236_290 Hb_000236_290 Hb_019516_070--Hb_000236_290 Hb_003177_040 Hb_003177_040 Hb_019516_070--Hb_003177_040 Hb_001159_230 Hb_001159_230 Hb_019516_070--Hb_001159_230 Hb_005730_060 Hb_005730_060 Hb_019516_070--Hb_005730_060 Hb_001699_080 Hb_001699_080 Hb_019516_070--Hb_001699_080 Hb_000297_140 Hb_000297_140 Hb_000820_110--Hb_000297_140 Hb_000193_210 Hb_000193_210 Hb_000820_110--Hb_000193_210 Hb_019516_060 Hb_019516_060 Hb_000820_110--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_000820_110--Hb_006750_010 Hb_000077_100 Hb_000077_100 Hb_000820_110--Hb_000077_100 Hb_000236_290--Hb_003177_040 Hb_000108_180 Hb_000108_180 Hb_000236_290--Hb_000108_180 Hb_008461_060 Hb_008461_060 Hb_000236_290--Hb_008461_060 Hb_005295_020 Hb_005295_020 Hb_000236_290--Hb_005295_020 Hb_000236_290--Hb_001699_080 Hb_003177_040--Hb_000108_180 Hb_001001_070 Hb_001001_070 Hb_003177_040--Hb_001001_070 Hb_003177_040--Hb_008461_060 Hb_003177_040--Hb_001699_080 Hb_000251_120 Hb_000251_120 Hb_003177_040--Hb_000251_120 Hb_000878_050 Hb_000878_050 Hb_001159_230--Hb_000878_050 Hb_006002_050 Hb_006002_050 Hb_001159_230--Hb_006002_050 Hb_001095_020 Hb_001095_020 Hb_001159_230--Hb_001095_020 Hb_004696_010 Hb_004696_010 Hb_001159_230--Hb_004696_010 Hb_004435_020 Hb_004435_020 Hb_001159_230--Hb_004435_020 Hb_005976_110 Hb_005976_110 Hb_001159_230--Hb_005976_110 Hb_010810_060 Hb_010810_060 Hb_005730_060--Hb_010810_060 Hb_027472_060 Hb_027472_060 Hb_005730_060--Hb_027472_060 Hb_003835_080 Hb_003835_080 Hb_005730_060--Hb_003835_080 Hb_001538_080 Hb_001538_080 Hb_005730_060--Hb_001538_080 Hb_005730_060--Hb_001159_230 Hb_000031_180 Hb_000031_180 Hb_005730_060--Hb_000031_180 Hb_000103_130 Hb_000103_130 Hb_001699_080--Hb_000103_130 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_002081_020 Hb_002081_020 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.513674 0.83923 8.24873 25.0656 0.423705 0.246882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.57584 0.339686 1.11467 0.651987 15.6449

CAGE analysis