Hb_000193_210

Information

Type -
Description -
Location Contig193: 184132-186645
Sequence    

Annotation

kegg
ID rcu:RCOM_1471290
description Galactoside 2-alpha-L-fucosyltransferase, putative (EC:2.4.1.69)
nr
ID XP_012080297.1
description PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
swissprot
ID Q9M5Q1
description Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1
trembl
ID B9RLW2
description Galactoside 2-alpha-L-fucosyltransferase, putative OS=Ricinus communis GN=RCOM_1471290 PE=4 SV=1
Gene Ontology
ID GO:0016020
description galactoside 2-alpha-l-fucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19247: 184869-186487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_210 0.0 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
2 Hb_000820_110 0.0929900205 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
3 Hb_000077_100 0.1219880835 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
4 Hb_003177_040 0.1292055705 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
5 Hb_001493_060 0.1386828171 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
6 Hb_000108_180 0.1395517197 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
7 Hb_003462_040 0.1425551125 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_001584_280 0.1433940267 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
9 Hb_019516_070 0.1451427785 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
10 Hb_000856_400 0.1458843143 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
11 Hb_006750_010 0.1471890738 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
12 Hb_025645_020 0.1504168122 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_000246_130 0.1527994249 - - tubulin alpha chain, putative [Ricinus communis]
14 Hb_000297_140 0.1531128883 - - hypothetical protein RCOM_0293450 [Ricinus communis]
15 Hb_019516_060 0.1534699096 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
16 Hb_001369_010 0.1555033701 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
17 Hb_000922_400 0.1578341201 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
18 Hb_011021_010 0.158156605 - - kinase, putative [Ricinus communis]
19 Hb_003097_160 0.1637750843 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
20 Hb_000347_190 0.1644129938 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]

Gene co-expression network

sample Hb_000193_210 Hb_000193_210 Hb_000820_110 Hb_000820_110 Hb_000193_210--Hb_000820_110 Hb_000077_100 Hb_000077_100 Hb_000193_210--Hb_000077_100 Hb_003177_040 Hb_003177_040 Hb_000193_210--Hb_003177_040 Hb_001493_060 Hb_001493_060 Hb_000193_210--Hb_001493_060 Hb_000108_180 Hb_000108_180 Hb_000193_210--Hb_000108_180 Hb_003462_040 Hb_003462_040 Hb_000193_210--Hb_003462_040 Hb_000297_140 Hb_000297_140 Hb_000820_110--Hb_000297_140 Hb_019516_070 Hb_019516_070 Hb_000820_110--Hb_019516_070 Hb_019516_060 Hb_019516_060 Hb_000820_110--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_000820_110--Hb_006750_010 Hb_000820_110--Hb_000077_100 Hb_030565_100 Hb_030565_100 Hb_000077_100--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_000077_100--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_000077_100--Hb_029223_040 Hb_000580_110 Hb_000580_110 Hb_000077_100--Hb_000580_110 Hb_003177_040--Hb_000108_180 Hb_001001_070 Hb_001001_070 Hb_003177_040--Hb_001001_070 Hb_000236_290 Hb_000236_290 Hb_003177_040--Hb_000236_290 Hb_008461_060 Hb_008461_060 Hb_003177_040--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_003177_040--Hb_001699_080 Hb_000251_120 Hb_000251_120 Hb_003177_040--Hb_000251_120 Hb_002164_020 Hb_002164_020 Hb_001493_060--Hb_002164_020 Hb_000347_190 Hb_000347_190 Hb_001493_060--Hb_000347_190 Hb_002596_080 Hb_002596_080 Hb_001493_060--Hb_002596_080 Hb_009079_050 Hb_009079_050 Hb_001493_060--Hb_009079_050 Hb_001493_060--Hb_000580_110 Hb_001195_090 Hb_001195_090 Hb_001493_060--Hb_001195_090 Hb_000108_180--Hb_000251_120 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_003462_040--Hb_019516_060 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.789292 0.692231 5.25049 16.8515 1.17542 1.15344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.515385 0.405508 0.511561 1.34542 9.77144

CAGE analysis